Related references
Note: Only part of the references are listed.Universal protein misfolding intermediates can bypass the proteostasis network and remain soluble and less functional
Daniel A. Nissley et al.
NATURE COMMUNICATIONS (2022)
Knot_pull-python package for biopolymer smoothing and knot detection
Aleksandra Jarmolinska et al.
BIOINFORMATICS (2020)
On folding of entangled proteins: knots, lassos, links and θ-curves
Joanna Ida Sulkowska
CURRENT OPINION IN STRUCTURAL BIOLOGY (2020)
Electrostatic Interactions Govern Extreme Nascent Protein Ejection Times from Ribosomes and Can Delay Ribosome Recycling
Daniel A. Nissley et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2020)
Synonymous codon substitutions perturb cotranslational protein folding in vivo and impair cell fitness
Ian M. Walsh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Cotranslational folding allows misfolding-prone proteins to circumvent deep kinetic traps
Amir Bitran et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Developments in Polymer Theory and Simulation
Martin Kroger
POLYMERS (2020)
Domain topology, stability, and translation speed determine mechanical force generation on the ribosome
Sarah E. Leininger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
The Entanglements of Macromolecules and Their Influence on the Properties of Polymers
Andrzej Pawlak
MACROMOLECULAR CHEMISTRY AND PHYSICS (2019)
A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data
Ajeet K. Sharma et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
Sequence and structural patterns detected in entangled proteins reveal the importance of co-translational folding
Marco Baiesi et al.
SCIENTIFIC REPORTS (2019)
A Single Synonymous Variant (c.354G>A [p.P118P]) in ADAMTS13 Confers Enhanced Specific Activity
Ryan Hunt et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)
Origins of the Mechanochemical Coupling of Peptide Bond Formation to Protein Synthesis
Benjamin Fritch et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2018)
UniProt: the universal protein knowledgebase (vol 45, pg D158, 2017)
Alexandre Renaux
NUCLEIC ACIDS RESEARCH (2018)
Structural Origins of FRET-Observed Nascent Chain Compaction on the Ribosome
Daniel A. Nissley et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2018)
Shaping proteostasis at the cellular, tissue, and organismal level
Ambre J. Sala et al.
JOURNAL OF CELL BIOLOGY (2017)
Exploring the correlation between the folding rates of proteins and the entanglement of their native states
Marco Baiesi et al.
JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL (2017)
Codon usage regulates protein structure and function by affecting translation elongation speed in Drosophila cells
Fangzhou Zhao et al.
NUCLEIC ACIDS RESEARCH (2017)
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
Peter Eastman et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Physical Origins of Codon Positions That Strongly Influence Cotranslational Folding: A Framework for Controlling Nascent-Protein Folding
Ajeet K. Sharma et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2016)
Synonymous Codons Direct Cotranslational Folding toward Different Protein Conformations
Florian Buhr et al.
MOLECULAR CELL (2016)
A combined cryo-EM and molecular dynamics approach reveals the mechanism of ErmBL-mediated translation arrest
Stefan Arenz et al.
NATURE COMMUNICATIONS (2016)
Complex lasso: new entangled motifs in proteins
Wanda Niemyska et al.
SCIENTIFIC REPORTS (2016)
Codon Usage Influences the Local Rate of Translation Elongation to Regulate Co-translational Protein Folding
Chien-Hung Yu et al.
MOLECULAR CELL (2015)
EzCatDB: the enzyme reaction database, 2015 update
Nozomi Nagano et al.
NUCLEIC ACIDS RESEARCH (2015)
XSEDE: Accelerating Scientific Discovery
John Towns et al.
COMPUTING IN SCIENCE & ENGINEERING (2014)
Small molecule probes to quantify the functional fraction of a specific protein in a cell with minimal folding equilibrium shifts
Yu Liu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Pierced Lasso Bundles Are a New Class of Knot-like Motifs
Ellinor Haglund et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Golden triangle for folding rates of globular proteins
Sergiy O. Garbuzynskiy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Silent Substitutions Predictably Alter Translation Elongation Rates and Protein Folding Efficiencies
Paige S. Spencer et al.
JOURNAL OF MOLECULAR BIOLOGY (2012)
Trigger Factor Slows Co-translational Folding through Kinetic Trapping while Sterically Protecting the Nascent Chain from Aberrant Cytosolic Interactions
Edward P. O'Brien et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)
The Unique Cysteine Knot Regulates the Pleotropic Hormone Leptin
Ellinor Haglund et al.
PLOS ONE (2012)
Structures of the Bacterial Ribosome in Classical and Hybrid States of tRNA Binding
Jack A. Dunkle et al.
SCIENCE (2011)
Dodging the crisis of folding proteins with knots
Joanna I. Sulkowska et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis
Aaron Fluitt et al.
COMPUTATIONAL BIOLOGY AND CHEMISTRY (2007)
EzCatDB: the Enzyme Catalytic-mechanism Database
N Nagano
NUCLEIC ACIDS RESEARCH (2005)
Prediction of disulfide-bonded cysteines in proteomes with a hidden neural network
PL Martelli et al.
PROTEOMICS (2004)
Protein conformational dynamics probed by single-molecule electron transfer
H Yang et al.
SCIENCE (2003)
An essential intermediate in the folding of dihydrofolate reductase
DK Heidary et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)