Related references
Note: Only part of the references are listed.Definition of a small core transcriptional circuit regulated by AML1-ETO
Kristy R. Stengel et al.
MOLECULAR CELL (2021)
A Fusion Transcription Factor-Driven Cancer Progresses to a Fusion-Independent Relapse via Constitutive Activation of a Downstream Transcriptional Target
Salah Boudjadi et al.
CANCER RESEARCH (2021)
Fast-acting chemical tools to delineate causality in transcriptional control
Martin G. Jaeger et al.
MOLECULAR CELL (2021)
Distinct properties and functions of CTCF revealed by a rapidly inducible degron system
Jing Luan et al.
CELL REPORTS (2021)
BAF complexes drive proliferation and block myogenic differentiation in fusion-positive rhabdomyosarcoma
Dominik Laubscher et al.
NATURE COMMUNICATIONS (2021)
Evidence of pioneer factor activity of an oncogenic fusion transcription factor
Benjamin D. Sunkel et al.
ISCIENCE (2021)
A protocol for rapid degradation of endogenous transcription factors in mammalian cells and identification of direct regulatory targets
Hillary M. Layden et al.
STAR PROTOCOLS (2021)
Miswired Enhancer Logic Drives a Cancer of the Muscle Lineage
Berkley E. Gryder et al.
ISCIENCE (2020)
Chemical genomics reveals histone deacetylases are required for core regulatory transcription
Berkley E. Gryder et al.
NATURE COMMUNICATIONS (2019)
Histone hyperacetylation disrupts core gene regulatory architecture in rhabdomyosarcoma
Berkley E. Gryder et al.
NATURE GENETICS (2019)
The dTAG system for immediate and target-specific protein degradation
Behnam Nabet et al.
NATURE CHEMICAL BIOLOGY (2018)
PAX3-FOXO1 drives miR-486-5p and represses miR-221 contributing to pathogenesis of alveolar rhabdomyosarcoma
Jason A. Hanna et al.
ONCOGENE (2018)
SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis
Matthias Muhar et al.
SCIENCE (2018)
PAX3-FOXO1 transgenic zebrafish models identify HES3 as a mediator of rhabdomyosarcoma tumorigenesis
Genevieve C. Kendall et al.
ELIFE (2018)
Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation
Jing Wang et al.
BMC GENOMICS (2018)
Identification of Therapeutic Targets in Rhabdomyosarcoma through Integrated Genomic, Epigenomic, and Proteomic Analyses
Elizabeth Stewart et al.
CANCER CELL (2018)
PAX3-FOXO1 Establishes Myogenic Super Enhancers and Confers BET Bromodomain Vulnerability
Berkley E. Gryder et al.
CANCER DISCOVERY (2017)
An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites
Peter J. Skene et al.
ELIFE (2017)
Proteomic mapping of cytosol-facing outer mitochondrial and ER membranes in living human cells by proximity biotinylation
Victoria Hung et al.
ELIFE (2017)
A matter of time - How transient transcription factor interactions create dynamic gene regulatory networks
Joseph Swift et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2017)
YY1 Is a Structural Regulator of Enhancer-Promoter Loops
Abraham S. Weintraub et al.
CELL (2017)
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization
Elphege P. Nora et al.
CELL (2017)
Helicase CHD4 is an epigenetic coregulator of PAX3-FOXO1 in alveolar rhabdomyosarcoma
Maria Bohm et al.
JOURNAL OF CLINICAL INVESTIGATION (2016)
Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)
Dig Bijay Mahat et al.
NATURE PROTOCOLS (2016)
Spatially resolved proteomic mapping in living cells with the engineered peroxidase APEX2
Victoria Hung et al.
NATURE PROTOCOLS (2016)
deepTools2: a next generation web server for deep-sequencing data analysis
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2016)
High-Resolution Mapping of RNA Polymerases Identifies Mechanisms of Sensitivity and Resistance to BET Inhibitors in t(8;21) AML
Yue Zhao et al.
CELL REPORTS (2016)
What are super-enhancers?
Sebastian Pott et al.
NATURE GENETICS (2015)
Directed evolution of APEX2 for electron microscopy and proximity labeling
Stephanie S. Lam et al.
NATURE METHODS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Comprehensive Genomic Analysis of Rhabdomyosarcoma Reveals a Landscape of Alterations Affecting a Common Genetic Axis in Fusion-Positive and Fusion-Negative Tumors
Jack F. Shern et al.
CANCER DISCOVERY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Discovery and Characterization of Super-Enhancer-Associated Dependencies in Diffuse Large B Cell Lymphoma
Bjoern Chapuy et al.
CANCER CELL (2013)
Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers
Jakob Loven et al.
CELL (2013)
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
Warren A. Whyte et al.
CELL (2013)
Differential analysis of gene regulation at transcript resolution with RNA-seq
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2013)
Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing
Hojoong Kwak et al.
SCIENCE (2013)
PAX3/FOXO1 Fusion Gene Status Is the Key Prognostic Molecular Marker in Rhabdomyosarcoma and Significantly Improves Current Risk Stratification
Edoardo Missiaglia et al.
JOURNAL OF CLINICAL ONCOLOGY (2012)
Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
Caryn S. Ross-Innes et al.
NATURE (2012)
Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy
Jeffrey D. Martell et al.
NATURE BIOTECHNOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Identifying ChIP-seq enrichment using MACS
Jianxing Feng et al.
NATURE PROTOCOLS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Genome-Wide Identification of PAX3-FKHR Binding Sites in Rhabdomyosarcoma Reveals Candidate Target Genes Important for Development and Cancer
Liang Cao et al.
CANCER RESEARCH (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
CDK8 is a positive regulator of transcriptional elongation within the serum response network
Aaron J. Donner et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
PAX3-FOXO1 fusion gene in rhabdomyosarcoma
Corinne M. Linardic
CANCER LETTERS (2008)
Cell-type-specific regulation of distinct sets of gene targets by Pax3 and Pax3/FKHR
S Begum et al.
ONCOGENE (2005)