4.7 Article

Structural and Functional Landscape of FAD-Dependent Histone Lysine Demethylases for New Drug Discovery

Related references

Note: Only part of the references are listed.
Review Pharmacology & Pharmacy

Repurposing antidepressants for anticancer drug discovery

Yihui Song et al.

Summary: Drug repurposing is an attractive strategy for finding new indications for existing drugs. Three approved antidepressants have shown potential in clinical trials for cancer treatment. By conducting further medicinal chemistry research, several TCP-based inhibitors of the histone lysine specific demethylase 1 enzyme have been discovered, showing promise for cancer treatment. Repurposing antidepressants could be a promising strategy for cancer treatment.

DRUG DISCOVERY TODAY (2022)

Review Chemistry, Medicinal

Annual review of lysine-specific demethylase 1 (LSD1/KDM1A) inhibitors in 2021

Yihui Song et al.

Summary: Lysine-specific demethylase 1 (LSD1/KDM1A) has emerged as a promising epigenetic target for disease treatment. This review provides an update on LSD1 inhibitors, including natural products, synthetic compounds, and cyclic peptides reported in 2021. The design strategies, structure-activity relationships, binding model analysis, and modes of action are discussed. Highlights include the repurposing of FDA-approved drugs as reversible LSD1 inhibitors, the identification of clinical candidates for neuro-developmental disorders, and the enhanced anti-cancer effects of dual inhibitors targeting both LSD1 and HDAC6 or tubulin.

EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY (2022)

Article Chemistry, Medicinal

Design and Synthesis of Tranylcypromine-Derived LSD1 Inhibitors with Improved hERG and Microsomal Stability Profiles

Yasuko Koda et al.

Summary: A series of S2157 derivatives were designed, synthesized, and evaluated, with compound 10 showing the most desirable activities and its eutomer S1427 being successfully isolated. S1427 exhibited potent LSD1 inhibitory activity, as well as desirable hERG channel inhibition and microsomal stability.

ACS MEDICINAL CHEMISTRY LETTERS (2022)

Article Multidisciplinary Sciences

Fine-tuned KDM1A alternative splicing regulates human cardiomyogenesis through an enzymatic-independent mechanism

Veronica Astro et al.

Summary: The histone demethylase KDM1A plays a crucial role in cardiac differentiation by regulating the expression of specific splice variants. The modulation of ubKDM1A and KDM1A+2a during fetal cardiac development is important for the specification and maintenance of cell identity. Deficiency of KDM1A severely impairs cardiac differentiation, while deficiency of KDM1A+2a enhances the differentiation into functional cardiac cells.

ISCIENCE (2022)

Article Chemistry, Medicinal

Design, synthesis, and structure-activity relationship of TAK-418 and its derivatives as a novel series of LSD1 inhibitors with lowered risk of hematological side effects

Yasushi Hattori et al.

Summary: LSD1 inhibitor is a potential treatment for diseases associated with epigenetic dysregulation. A novel series of LSD1 inhibitors has been designed to avoid hematological toxicity, and TAK-418 is a promising clinical candidate for treating CNS disorders.

EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY (2022)

Article Chemistry, Medicinal

Structure-Activity Relationship and In Silico Evaluation of cis- and trans-PCPA-Derived Inhibitors of LSD1 and LSD2

Hideaki Niwa et al.

Summary: In this study, we synthesized and evaluated multiple cis- and trans-PCPA derivatives for their inhibitory activity against LSD1 and LSD2. A derivative named 7c showed high inhibitory activity against both LSD1 and LSD2, and increased a significant histone modification in cells. Furthermore, a regression model based on machine learning was constructed and demonstrated good prediction accuracy for LSD1 inhibitory activity.

ACS MEDICINAL CHEMISTRY LETTERS (2022)

Article Chemistry, Medicinal

Reversible Lysine Specific Demethylase 1 (LSD1) Inhibitors: A Promising Wrench to Impair LSD1

Xing-Jie Dai et al.

Summary: LSD1, a FAD-dependent monoamine oxidase, functions as a transcription coactivator or corepressor to regulate histone methylation, and has emerged as a promising epigenetic target for anticancer treatment. Numerous inhibitors targeting LSD1 have been developed, with some undergoing clinical trials for cancer therapy. Significant advances have been made in the development of reversible LSD1 inhibitors over the past decade.

JOURNAL OF MEDICINAL CHEMISTRY (2021)

Article Multidisciplinary Sciences

LSD1 enzyme inhibitor TAK-418 unlocks aberrant epigenetic machinery and improves autism symptoms in neurodevelopmental disorder models

Rina Baba et al.

Summary: The inhibition of LSD1 enzyme activity can normalize aberrant gene expression in neurodevelopmental disorders and improve ASD-like behavioral deficits. This suggests that inhibiting LSD1 enzyme activity may be the key to restoring gene expression homeostasis.

SCIENCE ADVANCES (2021)

Article Chemistry, Medicinal

Structure-Based Identification of Potent Lysine-Specific Demethylase 1 Inhibitor Peptides and Temporary Cyclization to Enhance Proteolytic Stability and Cell Growth-Inhibitory Activity

Hiroki Kitagawa et al.

Summary: Peptides are promising drug candidates, but they are limited by susceptibility to degradation and inability to pass through cell membranes. This study developed a cell-permeable peptide inhibitor of LSD1/KDM1A using a strategy of temporary cyclization. The cyclized peptide showed enhanced stability to proteases and selective activation under reducing conditions in cells, effectively inhibiting proliferation of human acute myeloid leukemia cells.

JOURNAL OF MEDICINAL CHEMISTRY (2021)

Article Cell Biology

Targeting novel LSD1-dependent ACE2 demethylation domains inhibits SARS-CoV-2 replication

Wen Juan Tu et al.

Summary: A novel SARS-CoV-2 viral replication mechanism mediated by interactions between ACE2 and LSD1 has been discovered, and two new peptide inhibitors can competitively inhibit virus-ACE2 interactions to significantly inhibit viral replication. ACE2, in addition to being expressed on the cell membrane, also has a nuclear shuttling domain that can be blocked by a nuclear-specific ACE2 inhibitor, effectively inhibiting viral replication in cells.

CELL DISCOVERY (2021)

Article Chemistry, Medicinal

Discovery of Reversible Inhibitors of KDM1A Efficacious in Acute Myeloid Leukemia Models

Alessia Romussi et al.

ACS MEDICINAL CHEMISTRY LETTERS (2020)

Article Chemistry, Multidisciplinary

Macrocyclic Peptides Uncover a Novel Binding Mode for Reversible Inhibitors of LSD1

Jie Yang et al.

ACS OMEGA (2020)

Review Biochemistry & Molecular Biology

Biological roles of LSD1 beyond its demethylase activity

Feiying Gu et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2020)

Article Biochemistry & Molecular Biology

Bioinformatic Analysis of the Flavin-Dependent Amine Oxidase Superfamily: Adaptations for Substrate Specificity and Catalytic Diversity

Margarita A. Tararina et al.

JOURNAL OF MOLECULAR BIOLOGY (2020)

Article Biochemistry & Molecular Biology

Crystal Structure of the LSD1/CoREST Histone Demethylase Bound to Its Nucleosome Substrate

Sang-Ah Kim et al.

MOLECULAR CELL (2020)

Article Chemistry, Medicinal

Tranylcypromine Based Lysine-Specific Demethylase 1 Inhibitor: Summary and Perspective

Xing-Jie Dai et al.

JOURNAL OF MEDICINAL CHEMISTRY (2020)

Article Chemistry, Medicinal

Discovery of CC-90011: A Potent and Selective Reversible Inhibitor of Lysine Specific Demethylase 1 (LSD1)

Toufike Kanouni et al.

JOURNAL OF MEDICINAL CHEMISTRY (2020)

Article Multidisciplinary Sciences

The inhibition of LSD1 via sequestration contributes to tau-mediated neurodegeneration

Amanda K. Engstrom et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Review Oncology

LSD1/KDM1A inhibitors in clinical trials: advances and prospects

Yuan Fang et al.

JOURNAL OF HEMATOLOGY & ONCOLOGY (2019)

Review Dentistry, Oral Surgery & Medicine

Epigenetic gene regulation by histone demethylases: emerging role in oncogenesis and inflammation

M. K. Kang et al.

ORAL DISEASES (2017)

Review Biochemistry & Molecular Biology

Structural insight into inhibitors of flavin adenine dinucleotide-dependent lysine demethylases

Hideaki Niwa et al.

EPIGENETICS (2017)

Article Chemistry, Medicinal

3-(Piperidin-4-ylmethoxy)pyridine Containing Compounds Are Potent Inhibitors of Lysine Specific Demethylase 1

Fangrui Wu et al.

JOURNAL OF MEDICINAL CHEMISTRY (2016)

Article Chemistry, Medicinal

Evaluation of phenylcyclopropylamine compounds by enzymatic assay of lysine-specific demethylase 2 in the presence of NPAC peptide

Taeko Kakizawa et al.

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2016)

Article Biochemistry & Molecular Biology

The growing structural and functional complexity of the LSD1/KDM1A histone demethylase

Chiara Marabelli et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2016)

Article Chemistry, Medicinal

Recent Progress in Histone Demethylase Inhibitors

Tom E. McAllister et al.

JOURNAL OF MEDICINAL CHEMISTRY (2016)

Article Biochemistry & Molecular Biology

Assembly of methylated KDM1A and CHD1 drives androgen receptor-dependent transcription and translocation

Eric Metzger et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Biochemistry & Molecular Biology

G-quadruplex RNA binding and recognition by the lysine-specific histone demethylase-1 enzyme

Alexander Hirschi et al.

Article Genetics & Heredity

TCPs: privileged scaffolds for identifying potent LSD1 inhibitors for cancer therapy

Yi-Chao Zheng et al.

EPIGENOMICS (2016)

Article Biochemistry & Molecular Biology

Assembly of methylated KDM1A and CHD1 drives androgen receptor-dependent transcription and translocation

Eric Metzger et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Multidisciplinary Sciences

Polymyxins and quinazolines are LSD1/KDM1A inhibitors with unusual structural features

Valentina Speranzini et al.

SCIENCE ADVANCES (2016)

Review Biochemistry & Molecular Biology

KDM1 Class Flavin-Dependent Protein Lysine Demethylases

Jonathan M. Burg et al.

BIOPOLYMERS (2015)

Article Biochemistry & Molecular Biology

Lysine-Specific Demethylase 2 Suppresses Lipid Influx and Metabolism in Hepatic Cells

Katsuya Nagaoka et al.

MOLECULAR AND CELLULAR BIOLOGY (2015)

Review Genetics & Heredity

Medicinal chemistry insights in the discovery of novel LSD1 inhibitors

Xueshun Wang et al.

EPIGENOMICS (2015)

Article Biochemistry & Molecular Biology

A Selective Phenelzine Analogue Inhibitor of Histone Demethylase LSD1

Polina Prusevich et al.

ACS CHEMICAL BIOLOGY (2014)

Review Medicine, General & Internal

Epigenetic reprogramming in breast cancer: From new targets to new therapies

Tiffany A. Katz et al.

ANNALS OF MEDICINE (2014)

Article Biochemistry & Molecular Biology

Differential Properties of Transcriptional Complexes Formed by the CoREST Family

Alvaro P. Barrios et al.

MOLECULAR AND CELLULAR BIOLOGY (2014)

Article Chemistry, Medicinal

Nonpeptidic Propargylamines as Inhibitors of Lysine Specific Demethylase 1 (LSD1) with Cellular Activity

Martin L. Schmitt et al.

JOURNAL OF MEDICINAL CHEMISTRY (2013)

Review Biotechnology & Applied Microbiology

Histone lysine demethylases as targets for anticancer therapy

Jonas W. Hojfeldt et al.

NATURE REVIEWS DRUG DISCOVERY (2013)

Review Biochemistry & Molecular Biology

Flavin-Dependent Enzymes in Cancer Prevention

Danuta Wojcieszynska et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2012)

Review Genetics & Heredity

Histone methylation: a dynamic mark in health, disease and inheritance

Eric L. Greer et al.

NATURE REVIEWS GENETICS (2012)

Article Multidisciplinary Sciences

LSD1/CoREST is an allosteric nanoscale clamp regulated by H3-histone-tail molecular recognition

Riccardo Baron et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Regulation of somatic cell reprogramming through inducible mir-302 expression

Shi-Lung Lin et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

Potentiation of Ligand Binding through Cooperative Effects in Monoamine Oxidase B

Daniele Bonivento et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Article Chemistry, Multidisciplinary

Biochemical, Structural, and Biological Evaluation of Tranylcypromine Derivatives as Inhibitors of Histone Demethylases LSD1 and LSD2

Claudia Binda et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

Article Biochemistry & Molecular Biology

Human LSD2/KDM1b/AOF1 Regulates Gene Transcription by Modulating Intragenic H3K4me2 Methylation

Rui Fang et al.

MOLECULAR CELL (2010)

Article Biochemistry & Molecular Biology

A Feed-Forward Circuit Controlling Inducible NF-κB Target Gene Activation by Promoter Histone Demethylation

Dominic van Essen et al.

MOLECULAR CELL (2010)

Article Multidisciplinary Sciences

Reversible methylation of promoter-bound STAT3 by histone-modifying enzymes

Jinbo Yang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Novel trans-2-aryl-cyclopropylamine analogues as potent and selective dipeptidyl peptidase IV inhibitors

Ting-Yueh Tsai et al.

BIOORGANIC & MEDICINAL CHEMISTRY (2009)

Article Biochemistry & Molecular Biology

A Novel Mammalian Flavin-dependent Histone Demethylase

Aristotele Karytinos et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Multidisciplinary Sciences

KDM1B is a histone H3K4 demethylase required to establish maternal genomic imprints

David N. Ciccone et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

Crystal structure of histone demethylase LSD1 and tranylcypromine at 2.25 Å

Shinya Mimasu et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2008)

Review Biochemistry & Molecular Biology

LSD1: oxidative chemistry for multifaceted functions in chromatin regulation

Federico Forneris et al.

TRENDS IN BIOCHEMICAL SCIENCES (2008)

Article Biochemistry & Molecular Biology

Structural basis of LSD1-CoREST selectivity in histone H3 recognition

Federico Forneris et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Biochemistry & Molecular Biology

Structural basis of histone demethylation by LSD1 revealed by suicide inactivation

Maojun Yang et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)

Article Multidisciplinary Sciences

Crystal structure of human histone lysine-specific demethylase 1 (LSD1)

Yong Chen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Structural basis for CoREST-dependent demethylation of nucleosomes by the human LSD1 histone demethylase

Maojun Yang et al.

MOLECULAR CELL (2006)

Article Clinical Neurology

Tranylcypromine - New perspectives on an old'' drug

Helge Frieling et al.

EUROPEAN ARCHIVES OF PSYCHIATRY AND CLINICAL NEUROSCIENCE (2006)

Article Biochemistry & Molecular Biology

Crystal structure and mechanism of human lysine-specific demethylase-1

Pete Stavropoulos et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Histone H3 lysine 4 demethylation is a target of nonselective antidepressive medications

Min Gyu Lee et al.

CHEMISTRY & BIOLOGY (2006)

Review Biotechnology & Applied Microbiology

Epigenetic therapy of cancer: past, present and future

CB Yoo et al.

NATURE REVIEWS DRUG DISCOVERY (2006)

Article Biochemistry & Molecular Biology

Histone demethylation mediated by the nuclear arnine oxidase homolog LSD1

YJ Shi et al.