C-to-U and U-to-C: RNA editing in plant organelles and beyond

The genomes in the two energy-converting organelles of plant cells, chloroplasts and mitochondria, contain numerous 'errors' that are corrected at the level of RNA transcript copies. The genes encoded in the two endosymbiotic organelles would not function properly if their transcripts were not altered by site-specific cytidine-to-uridine (C-to-U) exchanges and by additional reverse U-to-C exchanges in hornworts, lycophytes, and ferns. These peculiar processes of plant RNA editing, re-establishing genetic information that could alternatively be present at the organelle genome level, has spurred much research over >30 years. Lately new studies have revealed numerous interesting insights, notably on the biochemical machinery identifying specific pyrimidine nucleobases for conversion from C to U and vice versa. Here, I will summarize prominent research findings that lately have contributed to our better understanding of these phenomena introducing an added layer of information processing in plant cells. Some of this recent progress is based on the successful functional expression of plant RNA editing factors in bacteria and mammalian cells. These research approaches have recapitulated natural processes of horizontal gene transfer through which some protist lineages seem to have acquired plant RNA editing factors and adapted them functionally for their own purposes. The review summarizes the state of research on plant organelle RNA editing including recent findings on C-to-U editing factors expressed in heterologous systems, insights into reverse U-to-C editing, and flowering plant editosome complexity.

Automated summary

The genomes of plant cells' energy-converting organelles, chloroplasts and mitochondria, have errors that are corrected in RNA transcript copies. The function of genes in these organelles relies on site-specific cytidine-to-uridine (C-to-U) exchanges and additional reverse U-to-C exchanges. Research on these peculiar processes of plant RNA editing has been ongoing for over 30 years. Recent studies have provided insights into the biochemical machinery and the role of horizontal gene transfer in the acquisition and functional adaptation of plant RNA editing factors in other organisms.