4.7 Article

Expression of miRNA-Targeted and Not-Targeted Reporter Genes Shows Mutual Influence and Intercellular Specificity

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Imaging translational control by Argonaute with single-molecule resolution in live cells

Charlotte A. Cialek et al.

Summary: The authors developed live-cell biosensors to investigate the impact of Argonaute proteins on single-mRNA translation dynamics. They found that Argonaute association gradually silences translation and leads to the clustering and coalescence of mRNA with P-bodies, maintaining a translationally silent state.

NATURE COMMUNICATIONS (2022)

Article Genetics & Heredity

Identification of Phosphorylated Amino Acids in Human TNRC6A C-Terminal Region and Their Effects on the Interaction with the CCR4-NOT Complex

Fusako Munakata et al.

Summary: Human GW182 family proteins act as scaffold proteins between AGO protein and RNA silencing-related proteins, with phosphorylation of TNRC6A affecting the interaction with the CCR4-NOT complex, which may impact RNA silencing activity.

GENES (2021)

Article Biochemistry & Molecular Biology

Functional Cyclization of Eukaryotic mRNAs

Olga M. Alekhina et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Article Biology

CSDE1 controls gene expression through the miRNA-mediated decay machinery

Pavan Kumar Kakumani et al.

LIFE SCIENCE ALLIANCE (2020)

Review Biochemistry & Molecular Biology

The Organizing Principles of Eukaryotic Ribosome Recruitment

Jerry Pelletier et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 88 (2019)

Article Multidisciplinary Sciences

RNA is a critical element for the sizing and the composition of phase-separated RNA-protein condensates

Marina Garcia-Jove Navarro et al.

NATURE COMMUNICATIONS (2019)

Article Multidisciplinary Sciences

DEAD-box ATPases are global regulators of phase-separated organelles

Maria Hondele et al.

NATURE (2019)

Article Biochemistry & Molecular Biology

ArrayExpress update - from bulk to single-cell expression data

Awais Athar et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

The Gene Ontology Resource: 20 years and still GOing strong

S. Carbon et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Multidisciplinary Sciences

The biochemical basis of microRNA targeting efficacy

Sean E. McGeary et al.

SCIENCE (2019)

Article Multidisciplinary Sciences

RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome

Briana Van Treeck et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Cell Biology

Translation initiation by cap-dependent ribosome recruitment: Recent insights and open questions

Nikolay E. Shirokikh et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2018)

Article Biochemical Research Methods

COMRADES determines in vivo RNA structures and interactions

Omer Ziv et al.

NATURE METHODS (2018)

Article Biochemistry & Molecular Biology

Revisiting the Closed-Loop Model and the Nature of mRNA 5′-3′ Communication

Quentin Vicens et al.

MOLECULAR CELL (2018)

Article Biochemistry & Molecular Biology

The Stress Granule Transcriptome Reveals Principles of mRNA Accumulation in Stress Granules

Anthony Khong et al.

MOLECULAR CELL (2017)

Article Biochemistry & Molecular Biology

Compositional Control of Phase-Separated Cellular Bodies

Salman F. Banani et al.

Review Cell Biology

Mechanistic insights into mammalian stress granule dynamics

Marc D. Panas et al.

JOURNAL OF CELL BIOLOGY (2016)

Article Biochemistry & Molecular Biology

A Specialized Mechanism of Translation Mediated by FXR1a-Associated MicroRNP in Cellular Quiescence

Syed I. A. Bukhari et al.

MOLECULAR CELL (2016)

Article Multidisciplinary Sciences

Real-time quantification of single RNA translation dynamics in living cells

Tatsuya Morisaki et al.

SCIENCE (2016)

Review Cell Biology

Principles and Properties of Stress Granules

David S. W. Protter et al.

TRENDS IN CELL BIOLOGY (2016)

Article Biology

ATPase activity of the DEAD-box protein Dhh1 controls processing body formation

Christopher Frederick Mugler et al.

ELIFE (2016)

Article Biochemistry & Molecular Biology

limma powers differential expression analyses for RNA-sequencing and microarray studies

Matthew E. Ritchie et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

Probing the closed-loop model of mRNA translation in living cells

Stuart K. Archer et al.

RNA BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Structural and Biochemical Insights to the Role of the CCR4-NOT Complex and DDX6 ATPase in MicroRNA Repression

Hansruedi Mathys et al.

MOLECULAR CELL (2014)

Article Biochemistry & Molecular Biology

microRNAs associated with the different human Argonaute proteins

Anne Dueck et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Microbiology

Molecular Mechanism of Scanning and Start Codon Selection in Eukaryotes

Alan G. Hinnebusch

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2011)

Article Biochemistry & Molecular Biology

miR-122 activates hepatitis C virus translation by a specialized mechanism requiring particular RNA components

Ashley P. E. Roberts et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

RNAstructure: software for RNA secondary structure prediction and analysis

Jessica S. Reuter et al.

BMC BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

The iron-sulphur protein RNase L inhibitor functions in translation termination

Sohail Khoshnevis et al.

EMBO REPORTS (2010)

Article Oncology

BYSTANDER EFFECTS INDUCED BY MEDIUM FROM IRRADIATED CELLS: SIMILAR TRANSCRIPTOME RESPONSES IN IRRADIATED AND BYSTANDER K562 CELLS

Robert Herok et al.

INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS (2010)

Review Cell Biology

The mechanism of eukaryotic translation initiation and principles of its regulation

Richard J. Jackson et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

ATP-dependent human RISC assembly pathways

Mayuko Yoda et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)

Article Biochemical Research Methods

VARNA: Interactive drawing and editing of the RNA secondary structure

Kevin Darty et al.

BIOINFORMATICS (2009)

Review Biochemistry & Molecular Biology

MicroRNAs: Target Recognition and Regulatory Functions

David P. Bartel

Article Biochemistry & Molecular Biology

Most mammalian mRNAs are conserved targets of microRNAs

Robin C. Friedman et al.

GENOME RESEARCH (2009)

Article Cell Biology

Cell cycle control of microRNA-mediated translation regulation

Shobha Vasudevan et al.

CELL CYCLE (2008)

Article Biochemistry & Molecular Biology

MicroRNA-10a binds the 5′UTR of ribosomal protein mRNAs and enhances their translation

Ulf Andersson Orom et al.

MOLECULAR CELL (2008)

Review Genetics & Heredity

Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

Witold Filipowicz et al.

NATURE REVIEWS GENETICS (2008)

Review Biotechnology & Applied Microbiology

The Argonaute protein family

Julia Hoeck et al.

GENOME BIOLOGY (2008)

Article Multidisciplinary Sciences

Switching from repression to activation: MicroRNAs can up-regulate translation

Shobha Vasudevan et al.

SCIENCE (2007)

Article Multidisciplinary Sciences

MicroRNA inhibition of translation initiation in vitro by targeting the cap-binding complex elF4F

Geraldine Mathonnet et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

P-body formation is a consequence, not the cause, of RNA-mediated gene silencing

Ana Eulalio et al.

MOLECULAR AND CELLULAR BIOLOGY (2007)

Review Cell Biology

Repression of protein synthesis by miRNAs: how many mechanisms?

Ramesh S. Pillai et al.

TRENDS IN CELL BIOLOGY (2007)

Article Multidisciplinary Sciences

Quantitative analysis of Argonaute protein reveals microRNA-dependent localization to stress granules

Anthony K. L. Leung et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Spectroscopic properties and photodynamic effects of new lipophilic porphyrin derivatives: Efficacy, localisation and cell death pathways

Gabriela Kramer-Marek et al.

JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Identification of novel argonaute-associated proteins

G Meister et al.

CURRENT BIOLOGY (2005)

Article Cell Biology

Disruption of GW bodies impairs mammalian RNA interference

A Jakymiw et al.

NATURE CELL BIOLOGY (2005)

Article Biochemical Research Methods

Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis

CL Wilson et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

MH Dai et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemical Research Methods

affy -: analysis of Affymetrix GeneChip data at the probe level

L Gautier et al.

BIOINFORMATICS (2004)