☆ 4.7 Article

Mapping of QTLs and Screening Candidate Genes Associated with the Ability of Sugarcane Tillering and Ratooning

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2023)

Related references

Note: Only part of the references are listed.

Article Plant Sciences

Identification of One Major QTL and a Novel Gene OsIAA17q5 Associated with Tiller Number in Rice Using QTL Analysis

Dan-Dan Zhao et al.

Summary: This study investigated the inheritance of tiller numbers in rice and identified a major effect locus on chromosome 5. Through candidate gene screening, the gene OsIAA17q5 was found to play a crucial role in regulating tiller numbers. These findings provide further understanding of the genetic mechanisms controlling tiller numbers in different growth stages.

PLANTS-BASEL (2022)

Add to Collection

Article Agronomy

Localization of salt-tolerant QTL in rice germination stage under different salinity concentrations

Yanning Wang et al.

Summary: This study aimed to identify the quantitative trait loci (QTL) related to salt tolerance in rice, focusing on traits such as root length, bud length, and survival percent under different salinity conditions. Through the use of chromosome segment substitution lines (CSSLs) derived from the varieties Nipponbare and 9311, a total of 18 QTLs were identified, with 13 of them being detected under salt stress conditions. These QTLs were classified into two categories, based on their expression under control and salt stress conditions. Furthermore, several QTLs were reported for the first time to be associated with salt stress in rice. The identification of these QTLs under salt stress conditions provides valuable genetic factors for improving salt tolerance in rice through the use of molecular marker technology, and contributes to a better understanding of the genetic mechanism underlying salt tolerance in rice.

EUPHYTICA (2022)

Add to Collection

Article Plant Sciences

Four-Year and Five-Developing-Stage Dynamic QTL Mapping for Tiller Number in the Hybrid Population of Agropyron Gaertn.

Yonghe Che et al.

Summary: This study conducted unconditional and conditional QTL mapping of tiller number in Agropyron Gaertn. and detected 37 QTLs controlling TN, distributed in six linkage groups. Some QTLs were detected in multiple years. The study also identified some relatively stable major QTLs, providing a reference for plant improvement.

FRONTIERS IN PLANT SCIENCE (2022)

Add to Collection

Review Biochemistry & Molecular Biology

GRAS transcription factors emerging regulator in plants growth, development, and multiple stresses

Muhammad Waseem et al.

Summary: GRAS transcription factors play multifunctional roles in plant growth, development, and stress responses. They are involved in important developmental processes such as flowering and root formation, and interact with hormone signaling. However, there is a lack of comprehensive reviews on the features and roles of GRAS transcription factors in plants.

MOLECULAR BIOLOGY REPORTS (2022)

Add to Collection

Article Agronomy

QTL Analysis and Heterosis Loci of Effective Tiller Using Three Genetic Populations Derived from Indica Japonica Crosses in Rice

Xiaoxiao Deng et al.

Summary: This study investigated the molecular mechanisms underlying the heterosis of panicle numbers (PNs) and tiller numbers (TNs) in rice by detecting quantitative trait loci (QTLs) and heterosis-related loci. Multiple QTLs and genes related to PN and TN heterosis were identified, providing new insights into the heterosis mechanism of PN and TN in rice.

AGRONOMY-BASEL (2022)

Add to Collection

Article Nutrition & Dietetics

QTL Mapping for Grain Zinc and Iron Concentrations in Bread Wheat

Yue Wang et al.

Summary: This study identified multiple QTL for grain zinc (GZn) and grain iron (GFe) concentrations in wheat, highlighting the significant effects of line x environment interaction on the variation. The high heritabilities of GZn and GFe suggest the potential for genetic improvement through bio-fortification breeding. Conversion of SNP markers to high-throughput KASP markers provides valuable tools for marker-assisted selection in breeding programs.

FRONTIERS IN NUTRITION (2021)

Add to Collection

Article Genetics & Heredity

Integration of high-density genetic mapping with transcriptome analysis uncovers numerous agronomic QTL and reveals candidate genes for the control of tillering in sorghum

Rajanikanth Govindarajulu et al.

Summary: This study performed QTL mapping of multiple agronomic traits in a recombinant inbred line (RIL) population, identifying both environment-penetrant and environment-specific QTL. By integrating transcriptomics, key regulatory genes associated with tiller elongation in sorghum were discovered.

G3-GENES GENOMES GENETICS (2021)

Add to Collection

Article Plant Sciences

Utilization of a Sugarcane100K Single Nucleotide Polymorphisms Microarray-Derived High-Density Genetic Map in Quantitative Trait Loci Mapping and Function Role Prediction of Genes Related to Chlorophyll Content in Sugarcane

Guilong Lu et al.

Summary: Chlorophyll content trait was explored in this study to improve sugarcane yield. The trait was significantly and positively correlated with Fv/Fm during elongation phase, as well as with plant height, stalk diameter, and brix during maturity phase. QTL mapping identified 31 loci, with one major QTL accounting for 12.95% of phenotypic variation explained. Twenty candidate genes related to chlorophyll content were identified, providing a theoretical reference for analyzing the genetic mechanism of chlorophyll synthesis in sugarcane.

FRONTIERS IN PLANT SCIENCE (2021)

Add to Collection

Article Agronomy

Map overlapping of QTL for resistance to Fusarium ear rot and associated traits in maize

Gerardo Mario Giomi et al.

Summary: By mapping QTL for disease resistance in maize hybrids, researchers identified key genomic regions that may contribute to disease resistance by increasing pericarp thickness and content of trans-ferulic acid (tFA). The joint models explained a significant portion of phenotypic variability for disease severity, pericarp thickness, and pericarp content of tFA, with the most important QTL overlapping in a specific genomic region.

EUPHYTICA (2021)

Add to Collection

Review Biology

Sugarcane Ratooning Ability: Research Status, Shortcomings, and Prospects

Fu Xu et al.

Summary: Sugarcane ratooning ability is crucial in determining production costs and benefits, with research focusing on limited genotypes and few studies evaluating a larger number of germplasm resources. The key factors influencing ratooning productivity and longevity include genotype, environment, and cultivation techniques. Optimizing technical methods for breeding sugarcane with strong ratooning ability is essential for enhancing efficiency and reducing costs.

BIOLOGY-BASEL (2021)

Add to Collection

Article Agronomy

Genome-Wide Association Study of the Genetic Basis of Effective Tiller Number in Rice

Mengmeng Ren et al.

Summary: In this study, a genome-wide association study was conducted to identify QTLs and favorable alleles associated with rice effective tiller number. The results showed potential application of the identified genes and alleles in molecular breeding for high effective tiller number and grain yield in rice. Additionally, novel candidate genes that may affect effective tiller number were identified, and the positive association of one gene with tiller number was validated.

RICE (2021)

Add to Collection

Article Agronomy

Identifying genomic regions controlling ratoon stunting disease resistance in sugarcane (Saccharum spp.) clonal F1 population

Qian You et al.

Summary: The study aimed to identify quantitative trait loci (QTL) associated with sugarcane ratoon stunting disease (RSD) resistance and develop molecular markers for marker-assisted breeding. A total of 23 QTL associated with RSD resistance were identified, along with 82 disease resistance genes. GACD V.1.2 was found to be more efficient in QTL analysis than IciMapping V.3.3 in clonal species.

CROP JOURNAL (2021)

Add to Collection

Article Biochemistry & Molecular Biology

A novel, major, and validated QTL for the effective tiller number located on chromosome arm 1BL in bread wheat

Jiajun Liu et al.

PLANT MOLECULAR BIOLOGY (2020)

Add to Collection

Article Agronomy

Association of Physiological Responses and Root Distribution Patterns of Ratooning Ability and Yield of the Second Ratoon Cane in Sugarcane Elite Clones

Saranya Chumphu et al.

AGRONOMY-BASEL (2019)

Add to Collection

Article Agronomy

Development of an Axiom Sugarcane100K SNP array for genetic map construction and QTL identification

Qian You et al.

THEORETICAL AND APPLIED GENETICS (2019)

Add to Collection

Article Agronomy

Effect of GA3 and Gly Plant Growth Regulators on Productivity and Sugar Content of Sugarcane

Cong Truc Nguyen et al.

AGRICULTURE-BASEL (2019)

Add to Collection

Article Agronomy

Genetic dissection of rice (Oryza sativa L.) tiller, plant height, and grain yield based on QTL mapping and metaanalysis

L. Lei et al.

EUPHYTICA (2018)

Add to Collection

Article Plant Sciences

Identifying Quantitative Trait Loci (QTLs) and Developing Diagnostic Markers Linked to Orange Rust Resistance in Sugarcane (Saccharum spp.)

Xiping Yang et al.

FRONTIERS IN PLANT SCIENCE (2018)

Add to Collection

Article Biochemistry & Molecular Biology

A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice

Peng Cui et al.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2017)

Add to Collection

Review Plant Sciences

E3 Ubiquitin Ligases: Ubiquitous Actors in Plant Development and Abiotic Stress Responses

Kai Shu et al.

PLANT AND CELL PHYSIOLOGY (2017)

Add to Collection

Article Plant Sciences

Regulation of Strigolactone Biosynthesis by Gibberellin Signalingl

Shinsaku Ito et al.

PLANT PHYSIOLOGY (2017)

Add to Collection

Article Biotechnology & Applied Microbiology

GBS-based single dosage markers for linkage and QTL mapping allow gene mining for yield-related traits in sugarcane

Thiago Willian Almeida Balsalobre et al.

BMC GENOMICS (2017)

Add to Collection

Article Biotechnology & Applied Microbiology

High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool

Mark O. Winfield et al.

PLANT BIOTECHNOLOGY JOURNAL (2016)

Add to Collection

Article Plant Sciences

SNP-based analysis of genetic diversity reveals important alleles associated with seed size in rice

Weijie Tang et al.

BMC PLANT BIOLOGY (2016)

Add to Collection

Article Agronomy

Multi-environment QTL analysis of grain morphology traits and fine mapping of a kernel-width QTL in Zheng58 x SK maize population

Mohammad Sharif Raihan et al.

THEORETICAL AND APPLIED GENETICS (2016)

Add to Collection

Article Biotechnology & Applied Microbiology

Association mapping of cane weight and tillers per plant in sugarcane

Muhammad Bilal et al.

BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT (2015)

Add to Collection

Article Agronomy

QTL IciMapping: Integrated software for genetic linkage map construction and quantitative trait locus mapping in biparental populations

Lei Meng et al.

CROP JOURNAL (2015)

Add to Collection

Article Plant Sciences

GIGANTUS1 (GTS1), a member of Transducin/WD40 protein superfamily, controls seed germination, growth and biomass accumulation through ribosome-biogenesis protein interactions in Arabidopsis thaliana

Emma W. Gachomo et al.

BMC PLANT BIOLOGY (2014)

Add to Collection

Article Agronomy

Genetic mapping and QTL analysis for sugar yield-related traits in sugarcane

Ram Kushal Singh et al.

EUPHYTICA (2013)

Add to Collection

Article Agronomy

SSR markers linked to kernel weight and tiller number in sorghum identified by association mapping

Hari D. Upadhyaya et al.

EUPHYTICA (2012)

Add to Collection

Article Agronomy

Haplotype structure around Bru1 reveals a narrow genetic basis for brown rust resistance in modern sugarcane cultivars

L. Costet et al.

THEORETICAL AND APPLIED GENETICS (2012)

Add to Collection

Article Agronomy

Identification of a major quantitative trait locus (QTL) for yellow spot (Mycovellosiella koepkei) disease resistance in sugarcane

S. M. Aljanabi et al.

MOLECULAR BREEDING (2007)

Add to Collection

Review Plant Sciences

The role of GRAS proteins in plant signal transduction and development

C Bolle

PLANTA (2004)

Add to Collection

Article Agronomy

Targeted mapping of a sugarcane rust resistance gene (Bru1) using bulked segregant analysis and AFLP markers

C Asnaghi et al.

THEORETICAL AND APPLIED GENETICS (2004)

Add to Collection

Article Biochemistry & Molecular Biology

Transcription factors controlling plant secondary metabolism: what regulates the regulators?

DV Endt et al.

PHYTOCHEMISTRY (2002)

Add to Collection

Article Agronomy

Molecular dissection of complex traits in autopolyploids: mapping QTLs affecting sugar yield and related traits in sugarcane

R Ming et al.

THEORETICAL AND APPLIED GENETICS (2002)

Add to Collection

© Peeref 2019-2024. All rights reserved.