4.5 Article

Biogeographical ancestry, variable selection, and PLS-DA method: a new panel to assess ancestry in forensic samples via MPS technology

Related references

Note: Only part of the references are listed.
Article Genetics & Heredity

Evaluation of the VISAGE basic tool for appearance and ancestry inference using ForenSeq® chemistry on the MiSeq FGx® system

Catarina Xavier et al.

Summary: The VISAGE Consortium has developed a reliable and robust DNA phenotyping tool for appearance, age, and ancestry prediction, using new molecular and statistical tools to enhance the accuracy and detail of predictions.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2022)

Article Genetics & Heredity

Application of machine learning for ancestry inference using multi-InDel markers

Kuan Sun et al.

Summary: Ancestry inference through population stratification is important in forensic applications, as it can provide vital clues for criminal investigations. This study explored promising discriminant methods using multi-InDel markers for forensic ancestry inference. The results showed that XGBoost with one-hot encoding was more effective in population stratification and ancestry inference for challenging cases with admixed populations.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2022)

Article Genetics & Heredity

Evaluation of a custom GeneRead™ massively parallel sequencing assay with 210 ancestry informative SNPs using the Ion S5™ and MiSeq platforms

Ditte Truelsen et al.

Summary: The evaluation of a custom GeneRead DNAseq SNP panel with 210 markers on the Ion S5 and MiSeq sequencing platforms showed reproducible results with low noise levels. Despite some challenges with PCR amplification failures and locus drop-outs, genotyping concordance was generally high between the two platforms and known profiles generated using other sequencing assays, demonstrating the potential for reliable SNP genotyping in various applications.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2021)

Review Genetics & Heredity

Progress in forensic bone DNA analysis: Lessons learned from ancient DNA

Michael Hofreiter et al.

Summary: Research on ancient and forensic DNA has shown interconnectedness between the two fields, with potential for improved results through communication. Incorporating ancient DNA approaches into forensic protocols is promising, but requires comparative studies to tailor methods for forensic needs.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2021)

Article Genetics & Heredity

Development and Evaluation of the Ancestry Informative Marker Panel of the VISAGE Basic Tool

Maria de la Puente et al.

Summary: The VISAGE Basic Tool developed an ancestry informative SNP panel by combining 41 appearance predictive SNPs and 112 ancestry predictive SNPs. This panel showed good sequencing performance and can effectively differentiate individuals from different continental population groups, including individuals from South Asia.

GENES (2021)

Article Biochemical Research Methods

Biogeographic origin prediction of three continental populations through 42 ancestry informative SNPs

Xiao-Ye Jin et al.

ELECTROPHORESIS (2020)

Article Genetics & Heredity

PIMA: A population informative multiplex for the Americas

C. Carvalho Gontijo et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2020)

Article Medicine, Legal

The MASTiFF panel-a versatile multiple-allele SNP test for forensics

C. Phillips et al.

INTERNATIONAL JOURNAL OF LEGAL MEDICINE (2020)

Article Automation & Control Systems

Comparison of variable selection methods in partial least squares regression

Tahir Mehmood et al.

JOURNAL OF CHEMOMETRICS (2020)

Article Genetics & Heredity

How to choose sets of ancestry informative markers: A supervised feature selection approach

Peter Pfaffelhuber et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2020)

Article Multidisciplinary Sciences

Insights into human genetic variation and population history from 929 diverse genomes

Anders Bergstrom et al.

SCIENCE (2020)

Article Multidisciplinary Sciences

Differentiation of Hispanic biogeographic ancestry with 80 ancestry informative markers

Casandra H. Setser et al.

SCIENTIFIC REPORTS (2020)

Article Genetics & Heredity

Genetic Diversity and Low Stratification of the Population of the United Arab Emirates

Guan K. Tay et al.

FRONTIERS IN GENETICS (2020)

Article Genetics & Heredity

Forensic evaluation of the Asia Pacific ancestry-informative MAPlex assay

C. Xavier et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2020)

Article Genetics & Heredity

Development and validation of the VISAGE AmpliSeq basic tool to predict appearance and ancestry from DNA

Catarina Xavier et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2020)

Article Genetics & Heredity

Evaluation of the Precision of Ancestry Inferences in South American Admixed Populations

Vania Pereira et al.

FRONTIERS IN GENETICS (2020)

Article Biochemical Research Methods

Probabilistic ancestry maps: a method to assess and visualize population substructures in genetics

Helena A. Gaspar et al.

BMC BIOINFORMATICS (2019)

Article Genetics & Heredity

Development and validation of the EUROFORGEN NAME (North African and Middle Eastern) ancestry panel

V Pereira et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2019)

Article Genetics & Heredity

AIM-SNPtag: A computationally efficient approach for developing ancestry-informative SNP panels

Shilei Zhao et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2019)

Article Multidisciplinary Sciences

Population relationships based on 170 ancestry SNPs from the combined Kidd and Seldin panels

Andrew J. Pakstis et al.

SCIENTIFIC REPORTS (2019)

Proceedings Paper Computer Science, Artificial Intelligence

Deep Learning Approach to Biogeographical Ancestry Inference

Yue Qu et al.

KNOWLEDGE-BASED AND INTELLIGENT INFORMATION & ENGINEERING SYSTEMS (KES 2019) (2019)

Article Genetics & Heredity

Global analysis of population stratification using a smart panel of 27 continental ancestry-informative SNPs

Li Jiang et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2018)

Article Genetics & Heredity

Improving ancestry distinctions among Southwest Asian populations

Ozlem Bulbul et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2018)

Article Genetics & Heredity

Forensic genetic informativeness of an SNP panel consisting of 19 multi-allelic SNPs

Zehua Gao et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2018)

Article Biochemical Research Methods

mixOmics: An R package for 'omics feature selection and multiple data integration

Florian Rohart et al.

PLOS COMPUTATIONAL BIOLOGY (2017)

Article Genetics & Heredity

GenoGeographer - A tool for genogeographic inference

Torben Tvedebrink et al.

FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES (2017)

Article Genetics & Heredity

Pacifiplex: an ancestry-informative SNP panel centred on Australia and the Pacific region

Carla Santos et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2016)

Article Genetics & Heredity

Simple and cost-effective 14-loci SNP assay designed for differentiation of European, East Asian and African samples

Urszula Rogalla et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2015)

Article Biochemistry & Molecular Biology

Statistical Inference on Genetic Data Reveals the Complex Demographic History of Human Populations in Central Asia

Friso P. Palstra et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Multidisciplinary Sciences

A global reference for human genetic variation

David M. Altshuler et al.

NATURE (2015)

Article Genetics & Heredity

A 50-SNP assay for biogeographic ancestry and phenotype prediction in the US population

Katherine Butler Gettings et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2014)

Article Genetics & Heredity

Developing a novel panel of genome-wide ancestry informative markers for bio-geographical ancestry estimates

Jing Jia et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2014)

Article Genetics & Heredity

Building a forensic ancestry panel from the ground up: The EUROFORGEN Global AIM-SNP set

C. Phillips et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2014)

Article Genetics & Heredity

SNP variation with latitude: Analysis of the SNPforID 52-plex markers in north, mid-region and south Chilean populations

F. Moreno et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2014)

Review Chemistry, Analytical

Classification tools in chemistry. Part 1: linear models. PLS-DA

Davide Ballabio et al.

ANALYTICAL METHODS (2013)

Article Genetics & Heredity

Eurasiaplex: A forensic SNP assay for differentiating European and South Asian ancestries

C. Phillips et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2013)

Article Medicine, Legal

Prediction of people's origin from degraded DNA-presentation of SNP assays and calculation of probability

Micaela Poetsch et al.

INTERNATIONAL JOURNAL OF LEGAL MEDICINE (2013)

Article Genetics & Heredity

An overview of STRUCTURE: applications, parameter settings, and supporting software

Liliana Porras-Hurtado et al.

Frontiers in Genetics (2013)

Review Automation & Control Systems

A review of variable selection methods in Partial Least Squares Regression

Tahir Mehmood et al.

CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS (2012)

Article Biochemical Research Methods

A Partial Least Squares based algorithm for parsimonious variable selection

Tahir Mehmood et al.

ALGORITHMS FOR MOLECULAR BIOLOGY (2011)

Article Statistics & Probability

SPARSE LOGISTIC PRINCIPAL COMPONENTS ANALYSIS FOR BINARY DATA

Seokho Lee et al.

ANNALS OF APPLIED STATISTICS (2010)

Article Biochemistry & Molecular Biology

Fast model-based estimation of ancestry in unrelated individuals

David H. Alexander et al.

GENOME RESEARCH (2009)

Article Genetics & Heredity

Candidate SNPs for a universal individual identification panel

Andrew J. Pakstis et al.

HUMAN GENETICS (2007)

Article Biochemical Research Methods

A multiplex assay with 52 single nucleotide polymorphisms for human identification

Juan J. Sanchez et al.

ELECTROPHORESIS (2006)