4.7 Letter

Longitudinal Effects of 1-Year Smoking Cessation on Human Bronchial Epithelial Transcriptome

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

AutoGeneS: Automatic gene selection using multi-objective optimization for RNA-seq deconvolution

Hananeh Aliee et al.

Summary: AutoGeneS is a platform that automatically extracts discriminative genes and reveals cellular heterogeneity of bulk RNA samples without prior knowledge about marker genes. By simultaneously optimizing multiple criteria, AutoGeneS selects the most valuable genes for inferring cell-type proportions. Ground truth cell proportions analyzed by flow cytometry confirm the accuracy of AutoGeneS in identifying cell-type proportions.

CELL SYSTEMS (2021)

Article Biochemistry & Molecular Biology

A cellular census of human lungs identifies novel cell states in health and in asthma

Felipe A. Vieira Braga et al.

NATURE MEDICINE (2019)

Article Respiratory System

Serum periostin does not reflect type 2-driven inflammation in COPD

O. A. Carpaij et al.

RESPIRATORY RESEARCH (2018)

Article Medicine, General & Internal

The effects of smoking and smoking cessation on nasal mucociliary clearance, mucus properties and inflammation

Daniela Mitiyo Odagiri Utiyama et al.

CLINICS (2016)

Article Critical Care Medicine

Airway Basal Cells The Smoking Gun of Chronic Obstructive Pulmonary Disease

Ronald G. Crystal

AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2014)

Article Biochemical Research Methods

GSVA: gene set variation analysis for microarray and RNA-Seq data

Sonja Haenzelmann et al.

BMC BIOINFORMATICS (2013)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Biotechnology & Applied Microbiology

Reversible and permanent effects of tobacco smoke exposure on airway epithelial gene expression

Jennifer Beane et al.

GENOME BIOLOGY (2007)

Article Respiratory System

Effect of 1-year smoking cessation on airway inflammation in COPD and asymptomatic smokers

BWM Willemse et al.

EUROPEAN RESPIRATORY JOURNAL (2005)

Article Multidisciplinary Sciences

Effects of cigarette smoke on the human airway epithelial cell transcriptome

A Spira et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)