Predicting miRNA-disease association through combining miRNA function and network topological similarities based on MINE

Predicting associations between microRNAs (miRNAs) and diseases from the viewpoint of function modules has become increasingly popular However, existing methods obtained the relations between diseases and miRNAs only through the construction of similarity networks and neglected the complex network characteristic. In this paper, a new method named combining mirNA function similarities and network topology similarities based on module identification in networks (ComSim-MINE) was developed. Combined similarity is calculated from the harmonic mean between miRNA function similarities aid network topology similarities. Experimental results showed that ComSim-MINE can compete with several state-of-the-art weighted function module algorithms, such as ClusterONE, MCODE, NEMO, and SPICi, and achieved the satisfactory results in terms of the composite score of F-measure, sensitivity, and accuracy based on the generated miRNA function interaction network. From the analysis of case studies, some new findings obtained from our proposed method provide clinicians new clues for epidemic diseases, such as COVID-19.

Automated summary

In this study, a new method called ComSim-MINE was proposed, which combines miRNA function similarities and network topology similarities based on module identification. Experimental results showed that this method achieved satisfactory results in terms of the composite score of the miRNA function interaction network.