Related references
Note: Only part of the references are listed.Database resources of the national center for biotechnology information
Eric W. Sayers et al.
NUCLEIC ACIDS RESEARCH (2022)
Clinical Metagenomics Is Increasingly Accurate and Affordable to Detect Enteric Bacterial Pathogens in Stool
Christy-Lynn Peterson et al.
MICROORGANISMS (2022)
Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using Oxford Nanopore's adaptive sequencing
Mike Marquet et al.
SCIENTIFIC REPORTS (2022)
Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples
Samuel Martin et al.
GENOME BIOLOGY (2022)
A plate of viruses: Viral metagenomics of supermarket chicken, pork and beef from Brazil
Samuel Cibulski et al.
VIROLOGY (2021)
Twelve years of SAMtools and BCFtools
Petr Danecek et al.
GIGASCIENCE (2021)
The European Union One Health 2019 Zoonoses Report
Frank Boelaert et al.
EFSA JOURNAL (2021)
The European Union One Health 2020 Zoonoses Report
EFSA JOURNAL (2021)
Application of Oxford Nanopore Technology to Plant Virus Detection
Lia W. Liefting et al.
VIRUSES-BASEL (2021)
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies
Florence E. Buytaers et al.
FRONTIERS IN MICROBIOLOGY (2021)
Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples
Kuiama Lewandowski et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2020)
Comparison of third-generation sequencing approaches to identify viral pathogens under public health emergency conditions
Yang Li et al.
VIRUS GENES (2020)
Novel opportunities for NGS-based one health surveillance of foodborne viruses
Marion Desdouits et al.
ONE HEALTH OUTLOOK (2020)
Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19
Sachin J. Shah et al.
ECLINICALMEDICINE (2020)
Challenges of investigating a large food-borne norovirus outbreak across all branches of a restaurant group in the United Kingdom, October 2016
Mari Morgan et al.
EUROSURVEILLANCE (2019)
Characterization of Norovirus and Other Human Enteric Viruses in Sewage and Stool Samples Through Next-Generation Sequencing
Sofia Strubbia et al.
FOOD AND ENVIRONMENTAL VIROLOGY (2019)
The European Union One Health 2018 Zoonoses Report
EFSA JOURNAL (2019)
Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food-borne microorganisms
Kostas Koutsoumanis et al.
EFSA JOURNAL (2019)
NanoPack: visualizing and processing long-read sequencing data
Wouter De Coster et al.
BIOINFORMATICS (2018)
Analysis of frozen strawberries involved in a large norovirus gastroenteritis outbreak using next generation sequencing and digital PCR
Christina Bartsch et al.
FOOD MICROBIOLOGY (2018)
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Metagenomics detection and characterisation of viruses in faecal samples from Australian wild birds
Jessy Vibin et al.
SCIENTIFIC REPORTS (2018)
Unbiased Strain-Typing of Arbovirus Directly from Mosquitoes Using Nanopore Sequencing: A Field-forward Biosurveillance Protocol
Joseph A. Russell et al.
SCIENTIFIC REPORTS (2018)
Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens
Natacha Couto et al.
SCIENTIFIC REPORTS (2018)
Quality control implementation for universal characterization of DNA and RNA viruses in clinical respiratory samples using single metagenomic next-generation sequencing workflow
A. Bal et al.
BMC INFECTIOUS DISEASES (2018)
Application of next generation sequencing toward sensitive detection of enteric viruses isolated from celery samples as an example of produce
Zhihui Yang et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2017)
Whole-Genome Next-Generation Sequencing to Study Within-Host Evolution of Norovirus (NoV) Among Immunocompromised Patients With Chronic NoV Infection
Janko van Beek et al.
JOURNAL OF INFECTIOUS DISEASES (2017)
A universal primer-independent next-generation sequencing approach for investigations of norovirus outbreaks and novel variants
Jannik Fonager et al.
SCIENTIFIC REPORTS (2017)
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary et al.
NUCLEIC ACIDS RESEARCH (2016)
An outbreak of norovirus gastroenteritis associated with asymptomatic food handlers in Kinmen, Taiwan
Meng-Yu Chen et al.
BMC PUBLIC HEALTH (2016)
Metagenomic analysis of viruses associated with field-grown and retail lettuce identifies human and animal viruses
Tiong Gim Aw et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2016)
Norovirus Whole-Genome Sequencing by SureSelect Target Enrichment: a Robust and Sensitive Method
Julianne R. Brown et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2016)
Mash: fast genome and metagenome distance estimation using MinHash
Brian D. Ondov et al.
GENOME BIOLOGY (2016)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
Batch testing for noroviruses in frozen raspberries
Ann De Keuckelaere et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2015)
Whole genome sequencing of fecal samples as a tool for the diagnosis and genetic characterization of norovirus
Herjan H. J. Bavelaar et al.
JOURNAL OF CLINICAL VIROLOGY (2015)
Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis
Nadia Conceicao-Neto et al.
SCIENTIFIC REPORTS (2015)
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
Alexander L. Greninger et al.
GENOME MEDICINE (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
Review: Norovirus prevalence in Belgian, Canadian and French fresh produce: A threat to human health?
L. Baert et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2011)
An automated genotyping tool for enteroviruses and noroviruses
A. Kroneman et al.
JOURNAL OF CLINICAL VIROLOGY (2011)
Novel norovirus recombinants and of GII.4 sub-lineages associated with outbreaks between 2006 and 2010 in Belgium
Elisabeth Mathijs et al.
VIROLOGY JOURNAL (2011)
Food-related norovirus outbreak among people attending two barbeques: epidemiological, virological, and environmental investigation
Roberto Vivancos et al.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2009)