4.6 Article

Random forest classifier improving phenylketonuria screening performance in two Chinese populations

Journal

FRONTIERS IN MOLECULAR BIOSCIENCES
Volume 9, Issue -, Pages -

Publisher

FRONTIERS MEDIA SA
DOI: 10.3389/fmolb.2022.986556

Keywords

newborn screening; MRM; machine learning; phenylketonuria; random forest classifier

Funding

  1. National Key Research and Development Program of China [2016YFC1000307]
  2. National Population and Reproductive Health Science Data Center [2005DKA32408]

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This article describes a PKU screening model using a random forest classifier, which demonstrates excellent performance in validation datasets and two Chinese testing populations, contributing to early diagnosis and prevention of PKU.
Phenylketonuria (PKU) is a genetic disorder with amino acid metabolic defect, which does great harms to the development of newborns and children. Early diagnosis and treatment can effectively prevent the disease progression. Here we developed a PKU screening model using random forest classifier (RFC) to improve PKU screening performance with excellent sensitivity, false positive rate (FPR) and positive predictive value (PPV) in all the validation dataset and two testing Chinese populations. RFC represented outstanding advantages comparing several different classification models based on machine learning and the traditional logistic regression model. RFC is promising to be applied to neonatal PKU screening.

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