Related references
Note: Only part of the references are listed.Transcriptomic analysis of OsRUS1 overexpression rice lines with rapid and dynamic leaf rolling morphology
Ning Yu et al.
SCIENTIFIC REPORTS (2022)
The Iron Deficiency-Regulated Small Protein Effector FEP3/IRON MAN1 Modulates Interaction of BRUTUS-LIKE1 With bHLH Subgroup IVc and POPEYE Transcription Factors
Daniela M. Lichtblau et al.
FRONTIERS IN PLANT SCIENCE (2022)
Iron uptake, signaling, and sensing in plants
Gang Liang
PLANT COMMUNICATIONS (2022)
Photoprotection during iron deficiency is mediated by the bHLH transcription factors PYE and ILR3
Garo Z. Akmakjian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Interdependent iron and phosphorus availability controls photosynthesis through retrograde signaling
Hye-In Nam et al.
NATURE COMMUNICATIONS (2021)
Long Noncoding RNAs in Plants
Andrzej T. Wierzbicki et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 72, 2021 (2021)
IRON MAN interacts with BRUTUS to maintain iron homeostasis in Arabidopsis
Yang Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
From Dark Matter to Star: Insight Into the Regulation Mechanisms of Plant Functional Long Non-Coding RNAs
Qingshuai Chen et al.
FRONTIERS IN PLANT SCIENCE (2021)
Impact of the SnRK1 protein kinase on sucrose homeostasis and the transcriptome during the diel cycle
Bruno Peixoto et al.
PLANT PHYSIOLOGY (2021)
A Comprehensive Online Database for Exploring ∼20,000 Public Arabidopsis RNA-Seq Libraries
Hong Zhang et al.
MOLECULAR PLANT (2020)
Iron deficiency and the loss of chloroplast iron-sulfur cluster assembly trigger distinct transcriptome changes in Arabidopsis rosettes
Gretchen Elizabeth Kroh et al.
METALLOMICS (2020)
Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0)
Huaiyu Mi et al.
NATURE PROTOCOLS (2019)
The Adaptive Mechanism of Plants to Iron Deficiency via Iron Uptake, Transport, and Homeostasis
Xinxin Zhang et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)
A Program for Iron Economy during Deficiency Targets Specific Fe Proteins
Laura J. Hantzis et al.
PLANT PHYSIOLOGY (2018)
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
Enis Afgan et al.
NUCLEIC ACIDS RESEARCH (2018)
Changes in iron availability in Arabidopsis are rapidly sensed in the leaf vasculature and impaired sensing leads to opposite transcriptional programs in leaves and roots
Mather A. Khan et al.
PLANT CELL AND ENVIRONMENT (2018)
1Vacuolar Iron Stores Gated by NRAMP3 and NRAMP4 Are the Primary Source of Iron in Germinating Seeds
Emma L. Bastow et al.
PLANT PHYSIOLOGY (2018)
IRON MAN is a ubiquitous family of peptides that control iron transport in plants
Louis Grillet et al.
NATURE PLANTS (2018)
Iron-Nicotianamine Transporters Are Required for Proper Long Distance Iron Signaling
Rakesh K. Kumar et al.
PLANT PHYSIOLOGY (2017)
Dissection of iron signaling and iron accumulation by overexpression of subgroup Ib bHLH039 protein
Maria Augusta Naranjo-Arcos et al.
SCIENTIFIC REPORTS (2017)
Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana
Xiaoli Li et al.
PLANT PHYSIOLOGY (2016)
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea et al.
NATURE BIOTECHNOLOGY (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
OPT3 Is a Component of the Iron-Signaling Network between Leaves and Roots and Misregulation of OPT3 Leads to an Over-Accumulation of Cadmium in Seeds
David G. Mendoza-Cozatl et al.
MOLECULAR PLANT (2014)
Identification and annotation of small RNA genes using ShortStack
Saima Shahid et al.
METHODS (2014)
OPT3 Is a Phloem-Specific Iron Transporter That Is Essential for Systemic Iron Signaling and Redistribution of Iron and Cadmium in Arabidopsis
Zhiyang Zhai et al.
PLANT CELL (2014)
Long non-coding RNA A novel endogenous source for the generation of Dicer-like 1-dependent small RNAs in Arabidopsis thaliana
Xiaoxia Ma et al.
RNA BIOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Iron sparing and recycling in a compartmentalized cell
Crysten E. Blaby-Haas et al.
CURRENT OPINION IN MICROBIOLOGY (2013)
ShortStack: Comprehensive annotation and quantification of small RNA genes
Michael J. Axtell
RNA (2013)
The transcriptional response of Arabidopsis leaves to Fe deficiency
Jorge Rodriguez-Celma et al.
FRONTIERS IN PLANT SCIENCE (2013)
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin et al.
NATURE METHODS (2012)
Characterization of Arabidopsis NEET Reveals an Ancient Role for NEET Proteins in Iron Metabolism
Rachel Nechushtai et al.
PLANT CELL (2012)
Systems and Trans-System Level Analysis Identifies Conserved Iron Deficiency Responses in the Plant Lineage
Eugen I. Urzica et al.
PLANT CELL (2012)
The bHLH Transcription Factor POPEYE Regulates Response to Iron Deficiency in Arabidopsis Roots
Terri A. Long et al.
PLANT CELL (2010)
Ferritins control interaction between iron homeostasis and oxidative stress in Arabidopsis
Karl Ravet et al.
PLANT JOURNAL (2009)
FIT interacts with AtbHLH38 and AtbHLH39 in regulating iron uptake gene expression for iron homeostasis in Arabidopsis
Youxi Yuan et al.
CELL RESEARCH (2008)
Iron deficiency-mediated stress regulation of four subgroup Ib BHLH genes in Arabidopsis thaliana
Hong-Yu Wang et al.
PLANTA (2007)
Mutations in Arabidopsis Yellow Stripe-Like1 and Yellow Stripe-Like3 reveal their roles in metal ion homeostasis and loading of metal ions in seeds
Brian M. Waters et al.
PLANT PHYSIOLOGY (2006)
Singlet oxygen production in photosynthesis
A Krieger-Liszkay
JOURNAL OF EXPERIMENTAL BOTANY (2005)
OXI1 kinase is necessary for oxidative burst-mediated signalling in Arabidopsis
MC Rentel et al.
NATURE (2004)
The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response
EP Colangelo et al.
PLANT CELL (2004)
IRT1, an Arabidopsis transporter essential for iron uptake from the soil and for plant growth
G Vert et al.
PLANT CELL (2002)
Expression of the IRT1 metal transporter is controlled by metals at the levels of transcript and protein accumulation
EL Connolly et al.
PLANT CELL (2002)
Maize yellow stripe1 encodes a membrane protein directly involved in Fe(III) uptake
C Curie et al.
NATURE (2001)