Journal
FRONTIERS IN PLANT SCIENCE
Volume 13, Issue -, Pages -Publisher
FRONTIERS MEDIA SA
DOI: 10.3389/fpls.2022.852291
Keywords
Brassica oleracea genome database; functional genomics; transcriptomics; metabolomics; Brassica oleracea
Categories
Funding
- Central Public-interest Scientific Institution Basal Research Fund [Y2021XK18]
- Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences (CAAS-ASTIP-IVFCAAS)
- China Agriculture Research System of MOF and MARA
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The Brassica oleracea Genome Database (BoGDB) is a platform that integrates multi-omics data for comprehensive research on B. oleracea.
Brassica oleracea is an important species due to its high economic and nutritional value. Moreover, it is an ideal model for studies of morphology and genome evolution. In the genomic era, with massive omics data being generated, a high-efficiency platform is crucial to deepen our understanding of this important species. In this study, we developed the B. oleracea Genome Database (BoGDB) to consolidate genome, transcriptome, and metabolome data of B. oleracea cultivars, providing the first cross-omics platform for B. oleracea. In order to make full use of the multi-omics data, BoGDB integrates multiple functional modules, including Gene Search, Heatmap, Genome Browser, Genome, Tools, Metabolic, and Variation, which provides a user-friendly platform for genomic and genetic research and molecular design breeding of B. oleracea crops. In addition, BoGDB will continue to collect new genomic data of B. oleracea and integrate them into BoGDB when higher-quality genomic data are released.
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