Related references
Note: Only part of the references are listed.Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota
Francesco Durazzi et al.
SCIENTIFIC REPORTS (2021)
Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses
Jose S. L. Patane et al.
BMC GENOMICS (2019)
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Qiyun Zhu et al.
NATURE COMMUNICATIONS (2019)
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles
Jasper J. Koehorst et al.
BIOINFORMATICS (2018)
Is There an Upper Limit to Genome Size?
Oriane Hidalgo et al.
TRENDS IN PLANT SCIENCE (2017)
Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome
Gary Xie et al.
INTERNATIONAL JOURNAL OF GENOMICS (2017)
dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
Tal Galili
BIOINFORMATICS (2015)
Genomic factors related to tissue tropism in Chlamydia pneumoniae infection
Thomas Weinmaier et al.
BMC GENOMICS (2015)
Characterization of 3 Megabase-Sized Circular Replicons from Vibrio cholerae
Kazuhisa Okada et al.
EMERGING INFECTIOUS DISEASES (2015)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
BIOINFORMATICS (2014)
Global Patterns of Protein Domain Gain and Loss in Superkingdoms
Arshan Nasir et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Genome Sequencing Identifies Two Nearly Unchanged Strains of Persistent Listeria monocytogenes Isolated at Two Different Fish Processing Plants Sampled 6 Years Apart
Anne Holch et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses
Tomas Vetrovsky et al.
PLOS ONE (2013)
Genomic Comparison between a Virulent Type A1 Strain of Francisella tularensis and Its Attenuated O-Antigen Mutant
Thero Modise et al.
JOURNAL OF BACTERIOLOGY (2012)
AIC model selection and multimodel inference in behavioral ecology: some background, observations, and comparisons
Kenneth P. Burnham et al.
BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY (2011)
Evolutionary versatility of eukaryotic protein domains revealed by their bigram networks
Xueying Xie et al.
BMC EVOLUTIONARY BIOLOGY (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Normalized Mutual Information Feature Selection
Pablo. A. Estevez et al.
IEEE TRANSACTIONS ON NEURAL NETWORKS (2009)
Evidence that Human Chlamydia pneumoniae Was Zoonotically Acquired
G. S. A. Myers et al.
JOURNAL OF BACTERIOLOGY (2009)
The Evolutionary History of Protein Domains Viewed by Species Phylogeny
Song Yang et al.
PLOS ONE (2009)
Phylogenetic signal and functional categories in Proteobacteria genomes
Inaki Comas et al.
BMC EVOLUTIONARY BIOLOGY (2007)
Global phylogeny determined by the combination of protein domains in proteomes
Minglei Wang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Sequences, sequence clusters and bacterial species
William P. Hanage et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)
Toward automatic reconstruction of a highly resolved tree of life
FD Ciccarelli et al.
SCIENCE (2006)
Phylogeny determined by protein domain content
S Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Re-evaluating prokaryotic species
D Gevers et al.
NATURE REVIEWS MICROBIOLOGY (2005)
The evolutionary fate of nonfunctional DNA in the bacterial endosymbiont Buchnera aphidicola
L Gómez-Valero et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Birth and death of protein domains: A simple model of evolution explains power law behavior
Georgy P. Karev et al.
BMC EVOLUTIONARY BIOLOGY (2002)
Database resources of the National Center for Biotechnology Information
DL Wheeler et al.
NUCLEIC ACIDS RESEARCH (2000)
Intraspecies variation in bacterial genomes: the need for a species genome concept
RT Lan et al.
TRENDS IN MICROBIOLOGY (2000)
Share Paper
