Viruses Ubiquity and Diversity in Atacama Desert Endolithic Communities

Viruses are key players in the environment, and recent metagenomic studies have revealed their diversity and genetic complexity. Despite progress in understanding the ecology of viruses in extreme environments, viruses' dynamics and functional roles in dryland ecosystems, which cover about 45% of the Earth's land surfaces, remain largely unexplored. This study characterizes virus sequences in the metagenomes of endolithic (within rock) microbial communities ubiquitously found in hyper-arid deserts. Taxonomic classification and network construction revealed the presence of novel and diverse viruses in communities inhabiting calcite, gypsum, and ignimbrite rocks. Viral genome maps show a high level of protein diversity within and across endolithic communities and the presence of virus-encoded auxiliary metabolic genes. Phage-host relationships were predicted by matching tRNA, CRISPR spacer, and protein sequences in the viral and microbial metagenomes. Primary producers and heterotrophic bacteria were found to be putative hosts to some viruses. Intriguingly, viral diversity was not correlated with microbial diversity across rock substrates.

Automated summary

This study characterizes the diversity and genetic complexity of viruses in endolithic microbial communities inhabiting rocks in hyper-arid deserts. The viral genome maps show a high level of protein diversity and the presence of virus-encoded auxiliary metabolic genes. Potential phage-host relationships were predicted between viruses and primary producers as well as heterotrophic bacteria. Furthermore, viral diversity was found not to be correlated with microbial diversity across rock substrates.