Related references
Note: Only part of the references are listed.Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells
Tammy C. T. Lan et al.
NATURE COMMUNICATIONS (2022)
Structure of the dengue virus RNA promoter
Yi-Ting Sun et al.
RNA (2022)
Epidemiology and costs of dengue in Brazil: a systematic literature review
Joao Bosco Siqueira Junior et al.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2022)
RNAvigator: A Pipeline to Identify Candidates for Functional RNA Structure Elements
Riccardo Delli Ponti et al.
FRONTIERS IN VIROLOGY (2022)
Cryo-EM advances in RNA structure determination
Haiyun Ma et al.
SIGNAL TRANSDUCTION AND TARGETED THERAPY (2022)
Determination of isoform-specific RNA structure with nanopore long reads
Jong Ghut Ashley Aw et al.
NATURE BIOTECHNOLOGY (2021)
Comprehensive in vivo secondary structure of the SARS-CoV-2 genome reveals novel regulatory motifs and mechanisms
Nicholas C. Huston et al.
MOLECULAR CELL (2021)
A novel SHAPE reagent enables the analysis of RNA structure in living cells with unprecedented accuracy
Tycho Marinus et al.
NUCLEIC ACIDS RESEARCH (2021)
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
Ryan A. Flynn et al.
CELL (2021)
In vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs
Lei Sun et al.
CELL (2021)
Genome-scale deconvolution of RNA structure ensembles
Edoardo Morandi et al.
NATURE METHODS (2021)
In vivo structure and dynamics of the SARS-CoV-2 RNA genome
Yan Zhang et al.
NATURE COMMUNICATIONS (2021)
The burden of the pandemic on the non-SARS-CoV-2 emergencies: A multicenter study
Milton Steinman et al.
AMERICAN JOURNAL OF EMERGENCY MEDICINE (2021)
Structural landscape of the complete genomes of dengue virus serotypes and other viral hemorrhagic fevers
Riccardo Delli Ponti et al.
BMC GENOMICS (2021)
The Pseudo-Circular Genomes of Flaviviruses: Structures, Mechanisms, and Functions of Circularization
Louis De Falco et al.
CELLS (2021)
Exploring the Druggability of Conserved RNA Regulatory Elements in the SARS-CoV-2 Genome
Sridhar Sreeramulu et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)
Cryo-EM and antisense targeting of the 28-kDa frameshift stimulation element from the SARS-CoV-2 RNA genome
Kaiming Zhang et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2021)
RNA-Binding Proteins at the Host-Pathogen Interface Targeting Viral Regulatory Elements
Azman Embarc-Buh et al.
VIRUSES-BASEL (2021)
Comprehensive mapping of SARS-CoV-2 interactions in vivo reveals functional virus-host interactions
Siwy Ling Yang et al.
NATURE COMMUNICATIONS (2021)
The architecture of the SARS-CoV-2 RNA genome inside virion
Changchang Cao et al.
NATURE COMMUNICATIONS (2021)
Long COVID: An overview
A. V. Raveendran et al.
DIABETES & METABOLIC SYNDROME-CLINICAL RESEARCH & REVIEWS (2021)
Is a Universal Influenza Virus Vaccine Possible?
Raffael Nachbagauer et al.
ANNUAL REVIEW OF MEDICINE, VOL 71, 2020 (2020)
An interactive web-based dashboard to track COVID-19 in real time
Ensheng Dong et al.
LANCET INFECTIOUS DISEASES (2020)
The Architecture of SARS-CoV-2 Transcriptome
Dongwan Kim et al.
CELL (2020)
Determination of RNA structural diversity and its role in HIV-1 RNA splicing
Phillip J. Tomezsko et al.
NATURE (2020)
RIC-seq for global in situ profiling of RNA-RNA spatial interactions
Zhaokui Cai et al.
NATURE (2020)
Structure of the PCBP2/stem-loop IV complex underlying translation initiation mediated by the poliovirus type I IRES
Simone A. Beckham et al.
NUCLEIC ACIDS RESEARCH (2020)
Mapping of Influenza Virus RNA-RNA Interactions Reveals a Flexible Network
Valerie Le Sage et al.
CELL REPORTS (2020)
Structural analysis of SARS-CoV-2 genome and predictions of the human interactome
Andrea Vandelli et al.
NUCLEIC ACIDS RESEARCH (2020)
Targeting the SARS-CoV-2 RNA Genome with Small Molecule Binders and Ribonuclease Targeting Chimera (RIBOTAC) Degraders
Hafeez S. Haniff et al.
ACS CENTRAL SCIENCE (2020)
The Short- and Long-Range RNA-RNA Interactome of SARS-CoV-2
Omer Ziv et al.
MOLECULAR CELL (2020)
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements
Ilaria Manfredonia et al.
NUCLEIC ACIDS RESEARCH (2020)
Structure mapping of dengue and Zika viruses reveals functional long-range interactions
Roland G. Huber et al.
NATURE COMMUNICATIONS (2019)
ShaKer: RNA SHAPE prediction using graph kernel
Stefan Mautner et al.
BIOINFORMATICS (2019)
Physical and Functional Analysis of Viral RNA Genomes by SHAPE
Mark A. Boerneke et al.
ANNUAL REVIEW OF VIROLOGY, VOL 6, 2019 (2019)
The structure of the influenza A virus genome
Bernadeta Dadonaite et al.
NATURE MICROBIOLOGY (2019)
Origin and evolution of pathogenic coronaviruses
Jie Cui et al.
NATURE REVIEWS MICROBIOLOGY (2019)
Principles for targeting RNA with drug-like small molecules
Katherine Deigan Warner et al.
NATURE REVIEWS DRUG DISCOVERY (2018)
COMRADES determines in vivo RNA structures and interactions
Omer Ziv et al.
NATURE METHODS (2018)
High-throughput determination of RNA structures
Eric J. Strobel et al.
NATURE REVIEWS GENETICS (2018)
Unconventional RNA-binding proteins step into the virus-host battlefront
Manuel Garcia-Moreno et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2018)
Integrative Analysis of Zika Virus Genome RNA Structure Reveals Critical Determinants of Viral Infectivity
Pan Li et al.
CELL HOST & MICROBE (2018)
Pervasive tertiary structure in the dengue virus RNA genome
Elizabeth A. Dethoff et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
ScanFold: an approach for genome-wide discovery of local RNA structural elements-applications to Zika virus and HIV
Ryan J. Andrews et al.
PEERJ (2018)
A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs
Elena Rivas et al.
NATURE METHODS (2017)
DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo
Meghan Zubradt et al.
NATURE METHODS (2017)
A high-throughput approach to profile RNA structure
Riccardo Delli Ponti et al.
NUCLEIC ACIDS RESEARCH (2017)
SHAPE directed RNA folding
Ronny Lorenz et al.
BIOINFORMATICS (2016)
RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure
Zhipeng Lu et al.
CELL (2016)
Zika Virus Infects Human Cortical Neural Progenitors and Attenuates Their Growth
Hengli Tang et al.
CELL STEM CELL (2016)
The Coding Region of the HCV Genome Contains a Network of Regulatory RNA Structures
Nathan Pirakitikulr et al.
MOLECULAR CELL (2016)
In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation
Jong Ghut Ashley Aw et al.
MOLECULAR CELL (2016)
Global Mapping of Human RNA-RNA Interactions
Eesha Sharma et al.
MOLECULAR CELL (2016)
Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE
Ryan A. Flynn et al.
NATURE PROTOCOLS (2016)
Structural imprints in vivo decode RNA regulatory mechanisms
Robert C. Spitale et al.
NATURE (2015)
Functionally conserved architecture of hepatitis C virus RNA genomes
David M. Mauger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Structure-Based Alignment and Consensus Secondary Structures for Three HIV-Related RNA Genomes
Christopher A. Lavender et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)
Nathan A. Siegfried et al.
NATURE METHODS (2014)
Dynalign II: common secondary structure prediction for RNA homologs with domain insertions
Yinghan Fu et al.
NUCLEIC ACIDS RESEARCH (2014)
Single-molecule correlated chemical probing of RNA
Philip J. Homan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Global RNA Structure Analysis of Poliovirus Identifies a Conserved RNA Structure Involved in Viral Replication and Infectivity
Cecily P. Burrill et al.
JOURNAL OF VIROLOGY (2013)
The global distribution and burden of dengue
Samir Bhatt et al.
NATURE (2013)
Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots
Christine E. Hajdin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Comparison of SIV and HIV-1 Genomic RNA Structures Reveals Impact of Sequence Evolution on Conserved and Non-Conserved Structural Motifs
Elizabeth Pollom et al.
PLOS PATHOGENS (2013)
ViPR: an open bioinformatics database and analysis resource for virology research
Brett E. Pickett et al.
NUCLEIC ACIDS RESEARCH (2012)
RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction
Stefan Washietl et al.
NUCLEIC ACIDS RESEARCH (2012)
Integrating Chemical Footprinting Data into RNA Secondary Structure Prediction
Kourosh Zarringhalam et al.
PLOS ONE (2012)
Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences
Zhenjiang Xu et al.
BIOINFORMATICS (2011)
TurboFold: Iterative probabilistic estimation of secondary structures for multiple RNA sequences
Arif O. Harmanci et al.
BMC BIOINFORMATICS (2011)
Discovery of selective bioactive small molecules by targeting an RNA dynamic ensemble
Andrew C. Stelzer et al.
NATURE CHEMICAL BIOLOGY (2011)
Functional RNA Elements in the Dengue Virus Genome
Leopoldo G. Gebhard et al.
VIRUSES-BASEL (2011)
RNAstructure: software for RNA secondary structure prediction and analysis
Jessica S. Reuter et al.
BMC BIOINFORMATICS (2010)
SHAPE-directed RNA secondary structure prediction
Justin T. Low et al.
METHODS (2010)
A hierarchical model for evolution of 23S ribosomal RNA
Konstantin Bokov et al.
NATURE (2009)
Architecture and secondary structure of an entire HIV-1 RNA genome
Joseph M. Watts et al.
NATURE (2009)
Accurate SHAPE-directed RNA structure determination
Katherine E. Deigan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Improved RNA secondary structure prediction by maximizing expected pair accuracy
Zhi John Lu et al.
RNA (2009)
RNAalifold: improved consensus structure prediction for RNA alignments
Stephan H. Bernhart et al.
BMC BIOINFORMATICS (2008)
The Vienna RNA Websuite
Andreas R. Gruber et al.
NUCLEIC ACIDS RESEARCH (2008)
Multiple structural alignment and clustering of RNA sequences
Elfar Torarinsson et al.
BIOINFORMATICS (2007)
A comparative method for finding and folding RNA secondary structures within protein-coding regions
JS Pedersen et al.
NUCLEIC ACIDS RESEARCH (2004)
Enterovirus 71 contains a type IIRES element that functions when eukaryotic initiation factor eIF4G is cleaved
SR Thompson et al.
VIROLOGY (2003)
Structure of HCVIRES domain II determined by NMR
PJ Lukavsky et al.
NATURE STRUCTURAL BIOLOGY (2003)
In vitro evidence for a long range pseudoknot in the 5′-untranslated and matrix coding regions of HIV-1 genomic RNA
JC Paillart et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)