Related references
Note: Only part of the references are listed.Comparative and phylogenetic analyses of Swertia L. (Gentianaceae) medicinal plants (from Qinghai, China) based on complete chloroplast genomes
Xin Xu et al.
GENETICS AND MOLECULAR BIOLOGY (2022)
Plastome structure, phylogenomics and evolution of plastid genes in Swertia (Gentianaceae) in the Qing-Tibetan Plateau
Qian Cao et al.
BMC PLANT BIOLOGY (2022)
Evolutionary characteristics and phylogeny of cotton chloroplast tRNAs
Ning Wang et al.
PLANTA (2021)
Adaptation of a parasitic lifestyle by Cuscuta gronovii Willd. ex Roem. & Schult.: large scale gene deletion, conserved gene orders, and low intraspecific divergence
Yang Ni et al.
MITOCHONDRIAL DNA PART B-RESOURCES (2021)
Codon Usage Bias: An Endless Tale
Andres Iriarte et al.
JOURNAL OF MOLECULAR EVOLUTION (2021)
Characterization and Comparative Analysis of Complete Chloroplast Genomes of Three Species From the Genus Astragalus (Leguminosae)
Chunyu Tian et al.
FRONTIERS IN GENETICS (2021)
HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies
Sergei L. Kosakovsky Pond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
Dong Zhang et al.
MOLECULAR ECOLOGY RESOURCES (2020)
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm
Can Firtina et al.
BIOINFORMATICS (2020)
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2019)
CPGAVAS2, an integrated plastome sequence annotator and analyzer
Linchun Shi et al.
NUCLEIC ACIDS RESEARCH (2019)
Characterization of the complete chloroplast genome of Buddleja alternifolia (Buddleiaceae)
Guoqi Zheng et al.
MITOCHONDRIAL DNA PART B-RESOURCES (2019)
IRscope: an online program to visualize the junction sites of chloroplast genomes
Ali Amiryousefi et al.
BIOINFORMATICS (2018)
Identification of plant species using variable length chloroplast DNA sequences
Chiara Santos et al.
FORENSIC SCIENCE INTERNATIONAL-GENETICS (2018)
Chloroplast DNA Dynamics: Copy Number, Quality Control and Degradation
Wataru Sakamoto et al.
PLANT AND CELL PHYSIOLOGY (2018)
DNA Barcode Authentication and Library Development for the Wood of Six Commercial Pterocarpus Species: the Critical Role of Xylarium Specimens
Lichao Jiao et al.
SCIENTIFIC REPORTS (2018)
NOVOPlasty: de novo assembly of organelle genomes from whole genome data
Nicolas Dierckxsens et al.
NUCLEIC ACIDS RESEARCH (2017)
MISA-web: a web server for microsatellite prediction
Sebastian Beier et al.
BIOINFORMATICS (2017)
A Screen for Swainsonine in Select North American Astragalus Species
Daniel Cook et al.
CHEMISTRY & BIODIVERSITY (2017)
Ribosomal proteomics: Strategies, approaches, and perspectives
Guokai Yan et al.
BIOCHIMIE (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
ycf1, the most promising plastid DNA barcode of land plants
Wenpan Dong et al.
SCIENTIFIC REPORTS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Two Distinct Plastid Genome Configurations and Unprecedented Intraspecies Length Variation in the accD Coding Region in Medicago truncatula
Csanad Gurdon et al.
DNA RESEARCH (2014)
An Improved Protocol for Intact Chloroplasts and cpDNA Isolation in Conifers
Leila do Nascimento Vieira et al.
PLOS ONE (2014)
An Improved Implementation of Effective Number of Codons (Nc)
Xiaoyan Sun et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Building Phylogenetic Trees from Molecular Data with MEGA
Barry G. Hall
MOLECULAR BIOLOGY AND EVOLUTION (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Quantitative optical trapping on single organelles in cell extract
Pradeep Barak et al.
NATURE METHODS (2013)
Potential Functional Replacement of the Plastidic Acetyl-CoA Carboxylase Subunit (accD) Gene by Recent Transfers to the Nucleus in Some Angiosperm Lineages
Mathieu Rousseau-Gueutin et al.
PLANT PHYSIOLOGY (2013)
Contradiction between Plastid Gene Transcription and Function Due to Complex Posttranscriptional Splicing: An Exemplary Study of ycf15 Function and Evolution in Angiosperms
Chao Shi et al.
PLOS ONE (2013)
Uncovering the Protein Translocon at the Chloroplast Inner Envelope Membrane
Shingo Kikuchi et al.
SCIENCE (2013)
Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding
Wenpan Dong et al.
PLOS ONE (2012)
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
Tiayyba Riaz et al.
NUCLEIC ACIDS RESEARCH (2011)
Chloroplast genomes of photosynthetic eukaryotes
Beverley R. Green
PLANT JOURNAL (2011)
A structural phylogenetic map for chloroplast photosynthesis
John F. Allen et al.
TRENDS IN PLANT SCIENCE (2011)
ANK6, a mitochondrial ankyrin repeat protein, is required for male-female gamete recognition in Arabidopsis thaliana
Feng Yu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
Richard Cronn et al.
NUCLEIC ACIDS RESEARCH (2008)
Rpl33, a nonessential plastid-encoded ribosomal protein in tobacco, is required under cold stress conditions
Marcelo Rogalski et al.
PLANT CELL (2008)
Gepard: a rapid and sensitive tool for creating dotplots on genome scale
Jan Krumsiek et al.
BIOINFORMATICS (2007)
Detecting non-coding selective pressure in coding regions
Hui Chen et al.
BMC EVOLUTIONARY BIOLOGY (2007)
Elimination of deleterious mutations in plastid genomes by gene conversion
O Khakhlova et al.
PLANT JOURNAL (2006)
Rapid and sensitive dot-matrix methods for genome analysis
Y Huang et al.
BIOINFORMATICS (2004)
VISTA: computational tools for comparative genomics
KA Frazer et al.
NUCLEIC ACIDS RESEARCH (2004)
Glocal alignment: finding rearrangements during alignment
Michael Brudno et al.
BIOINFORMATICS (2003)
Evolution of the chloroplast genome
CJ Howe et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES (2003)
Plastid genes transcribed by the nucleus-encoded plastid RNA polymerase show increased transcript accumulation in transgenic plants expressing a chloroplast-localized phage T7 RNA polymerase
AM Magee et al.
JOURNAL OF EXPERIMENTAL BOTANY (2002)
The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support
TR Buckley et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
REPuter: the manifold applications of repeat analysis on a genomic scale
S Kurtz et al.
NUCLEIC ACIDS RESEARCH (2001)
Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus
RS Millen et al.
PLANT CELL (2001)
High paraphyly of Swertia L. (Gentianaceae) in the Gentianella-lineage as revealed by nuclear and chloroplast DNA sequence variation
P Chassot et al.
PLANT SYSTEMATICS AND EVOLUTION (2001)
Multiple sequence alignment in phylogenetic analysis
A Phillips et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2000)
Share Paper
