Related references
Note: Only part of the references are listed.Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro
Bingjie Zhang et al.
NATURE BIOTECHNOLOGY (2022)
Single-cell chromatin state analysis with Signac
Tim Stuart et al.
NATURE METHODS (2021)
ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis
Jeffrey M. Granja et al.
NATURE GENETICS (2021)
Comprehensive analysis of single cell ATAC-seq data with SnapATAC
Rongxin Fang et al.
NATURE COMMUNICATIONS (2021)
GATA4 induces liver fibrosis regression by deactivating hepatic stellate cells
Noelia Arroyo et al.
JCI INSIGHT (2021)
Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression
Steven J. Wu et al.
NATURE BIOTECHNOLOGY (2021)
Single-cell CUT&Tag profiles histone modifications and transcription factors in complex tissues
Marek Bartosovic et al.
NATURE BIOTECHNOLOGY (2021)
EpiScanpy: integrated single-cell epigenomic analysis
Anna Danese et al.
NATURE COMMUNICATIONS (2021)
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
Tianzhi Wu et al.
INNOVATION (2021)
TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment
Dongqing Sun et al.
NUCLEIC ACIDS RESEARCH (2021)
PRMT5 Is Required for T Cell Survival and Proliferation by Maintaining Cytokine Signaling
Yukinori Tanaka et al.
FRONTIERS IN IMMUNOLOGY (2020)
Gene-Specific Actions of Transcriptional Coregulators Facilitate Physiological Plasticity: Evidence for a Physiological Coregulator Code
Michael R. Stallcup et al.
TRENDS IN BIOCHEMICAL SCIENCES (2020)
Eomes-Dependent Loss of the Co-activating Receptor CD226 Restrains CD8(+) T Cell Anti-tumor Functions and Limits the Efficacy of Cancer Immunotherapy
Marianne Weulersse et al.
IMMUNITY (2020)
Mechanisms of T-Cell Exhaustion in Pancreatic Cancer
Didem Saka et al.
CANCERS (2020)
Predicting transcription factor binding in single cells through deep learning
Laiyi Fu et al.
SCIENCE ADVANCES (2020)
A human cell atlas of fetal chromatin accessibility
Silvia Domcke et al.
SCIENCE (2020)
Integrative analyses of single-cell transcriptome and regulome using MAESTRO
Chenfei Wang et al.
GENOME BIOLOGY (2020)
Cistrome Data Browser and Toolkit: analyzing human and mouse genomic data using compendia of ChIP-seq and chromatin accessibility data
Rongbin Zheng et al.
QUANTITATIVE BIOLOGY (2020)
Histone H3K27 acetylation is dispensable for enhancer activity in mouse embryonic stem cells
Tiantian Zhang et al.
GENOME BIOLOGY (2020)
Profiling of Pluripotency Factors in Single Cells and Early Embryos
Sarah J. Hainer et al.
CELL (2019)
Identification of a primitive intestinal transcription factor network shared between esophageal adenocarcinoma and its precancerous precursor state
Connor Rogerson et al.
GENOME RESEARCH (2019)
cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data
Carmen Bravo Gonzalez-Blas et al.
NATURE METHODS (2019)
Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks
Shaojuan Li et al.
NUCLEIC ACIDS RESEARCH (2019)
Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion
Ansuman T. Satpathy et al.
NATURE BIOTECHNOLOGY (2019)
SCALE method for single-cell ATAC-seq analysis via latent feature extraction
Lei Xiong et al.
NATURE COMMUNICATIONS (2019)
Chromatin accessibility and the regulatory epigenome
Sandy L. Klemm et al.
NATURE REVIEWS GENETICS (2019)
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis
Rongbin Zheng et al.
NUCLEIC ACIDS RESEARCH (2019)
Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation
Jason D. Buenrostro et al.
CELL (2018)
T-bet and Eomes govern differentiation and function of mouse and human NK cells and ILC1
Jiang Zhang et al.
EUROPEAN JOURNAL OF IMMUNOLOGY (2018)
GIGGLE: a search engine for large-scale integrated genome analysis
Ryan M. Layer et al.
NATURE METHODS (2018)
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse
Shenglin Mei et al.
NUCLEIC ACIDS RESEARCH (2017)
Transcription Factor IRF4 Promotes CD8+ T Cell Exhaustion and Limits the Development of Memory-like T Cells during Chronic Infection
Kevin Man et al.
IMMUNITY (2017)
chromVAR : inferring transcription-factor-associated accessibility from single-cell epigenomic data
Alicia N. Schep et al.
NATURE METHODS (2017)
SCENIC: single-cell regulatory network inference and clustering
Sara Aibar et al.
NATURE METHODS (2017)
Massively multiplex single-cell Hi-C
Vijay Ramani et al.
NATURE METHODS (2017)
destiny: diffusion maps for large-scale single cell data in R
Philipp Angerer et al.
BIOINFORMATICS (2016)
Group 3 innate lymphoid cells continuously require the transcription factor GATA-3 after commitment
Chao Zhong et al.
NATURE IMMUNOLOGY (2016)
Reversing T-cell Dysfunction and Exhaustion in Cancer
Hassane M. Zarour
CLINICAL CANCER RESEARCH (2016)
Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles
Su Wang et al.
GENOME RESEARCH (2016)
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje et al.
NATURE (2015)
Single-cell chromatin accessibility reveals principles of regulatory variation
Jason D. Buenostro et al.
NATURE (2015)
Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues
Jason Ernst et al.
NATURE BIOTECHNOLOGY (2015)
Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
Matthew T. Weirauch et al.
CELL (2014)
Regulation of erythropoiesis by hypoxia-inducible factors
Volker H. Haase
BLOOD REVIEWS (2013)
The UCSC genome browser and associated tools
Robert M. Kuhn et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Gene-pair expression signatures reveal lineage control
Merja Heinaeniemi et al.
NATURE METHODS (2013)
Target analysis by integration of transcriptome and ChIP-seq data with BETA
Su Wang et al.
NATURE PROTOCOLS (2013)
The Transcription Factors Grainyhead-like 2 and NK2-Homeobox 1 Form a Regulatory Loop That Coordinates Lung Epithelial Cell Morphogenesis and Differentiation
Saaket Varma et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Transcription factor IRF4 determines germinal center formation through follicular T-helper cell differentiation
Nadine Bollig et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Determinants and dynamics of genome accessibility
Oliver Bell et al.
NATURE REVIEWS GENETICS (2011)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
ChIP-seq: advantages and challenges of a maturing technology
Peter J. Park
NATURE REVIEWS GENETICS (2009)
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Ali Mortazavi et al.
NATURE METHODS (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Myocardin is a bifunctional switch for smooth versus skeletal muscle differentiation
Xiaochun Long et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Genome-wide mapping of in vivo protein-DNA interactions
David S. Johnson et al.
SCIENCE (2007)
Bifurcation dynamics in lineage-commitment in bipotent progenitor cells
Sui Huang et al.
DEVELOPMENTAL BIOLOGY (2007)
BCL11B participates in the activation of IL2 gene expression in CD4+ T lymphocytes
Valeriu B. Cismasiu et al.
BLOOD (2006)
Contingent gene regulatory networks and B cell fate specification
H Singh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Share Paper
