Related references
Note: Only part of the references are listed.Genetic screening for single-cell variability modulators driving therapy resistance
Eduardo A. Torre et al.
NATURE GENETICS (2021)
Cellpose: a generalist algorithm for cellular segmentation
Carsen Stringer et al.
NATURE METHODS (2021)
Variability within rare cell states enables multiple paths toward drug resistance
Benjamin L. Emert et al.
NATURE BIOTECHNOLOGY (2021)
Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses
Songlei Liu et al.
NUCLEIC ACIDS RESEARCH (2021)
Gene Networks with Transcriptional Bursting Recapitulate Rare Transient Coordinated High Expression States in Cancer
Lea Schuh et al.
CELL SYSTEMS (2020)
A Unified Dynamic Programming Framework for the Analysis of Interacting Nucleic Acid Strands: Enhanced Models, Scalability, and Speed
Mark E. Fornace et al.
ACS SYNTHETIC BIOLOGY (2020)
Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH
Chee-Huat Linus Eng et al.
NATURE (2019)
SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues
Jocelyn Y. Kishi et al.
NATURE METHODS (2019)
Multiplexed detection of RNA using MERFISH and branched DNA amplification
Chenglong Xia et al.
SCIENTIFIC REPORTS (2019)
ClampFISH detects indivicual nucleic acid molecules using click chemistry-based amplification
Sara H. Rouhanifard et al.
NATURE BIOTECHNOLOGY (2019)
The Encyclopedia of DNA elements (ENCODE): data portal update
Carrie A. Davis et al.
NUCLEIC ACIDS RESEARCH (2018)
Efficient in situ barcode sequencing using padlock probe-based BaristaSeq
Xiaoyin Chen et al.
NUCLEIC ACIDS RESEARCH (2018)
Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust
Harry M. T. Choi et al.
DEVELOPMENT (2018)
Efficient in situ detection of mRNAs using the Chlorella virus DNA ligase for padlock probe ligation
Nils Schneider et al.
RNA (2017)
Fast, Background-Free DNA-PAINT Imaging Using FRET-Based Probes
Alexander Auer et al.
NANO LETTERS (2017)
Rare cell variability and drug- induced reprogramming as a mode of cancer drug resistance
Sydney M. Shaffer et al.
NATURE (2017)
The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing
Ed Lein et al.
SCIENCE (2017)
Highly specific imaging of mRNA in single cells by target RNA-initiated rolling circle amplification
Ruijie Deng et al.
CHEMICAL SCIENCE (2017)
In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus
Sheel Shah et al.
NEURON (2016)
High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing
Jeffrey R. Moffitt et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization
Jeffrey R. Moffitt et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues
Je Hyuk Lee et al.
NATURE PROTOCOLS (2015)
Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability
Harry M. T. Choi et al.
ACS NANO (2014)
Single-cell in situ RNA profiling by sequential hybridization
Eric Lubeck et al.
NATURE METHODS (2014)
RNA detection in situ with FISH-STICs
John R. Sinnamon et al.
RNA (2014)
Single-molecule tracking of the transcription cycle by sub-second RNA detection
Zhengjian Zhang et al.
ELIFE (2014)
RNAscope A Novel in Situ RNA Analysis Platform for Formalin-Fixed, Paraffin-Embedded Tissues
Fay Wang et al.
JOURNAL OF MOLECULAR DIAGNOSTICS (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Binding-Activated Localization Microscopy of DNA Structures
Ingmar Schoen et al.
NANO LETTERS (2011)
Dynamic Superresolution Imaging of Endogenous Proteins on Living Cells at Ultra-High Density
Gregory Giannone et al.
BIOPHYSICAL JOURNAL (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Novel application of Phi29 DNA polymerase: RNA detection and analysis in vitro and in situ by target RNA-primed RCA
Arunas Lagunavicius et al.
RNA (2009)
Imaging individual mRNA molecules using multiple singly labeled probes
Arjun Raj et al.
NATURE METHODS (2008)
Thermodynamic analysis of interacting nucleic acid strands
Robert M. Dirks et al.
SIAM REVIEW (2007)
Wide-field subdiffraction imaging by accumulated binding of diffusing probes
Alexey Sharonov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
Michael J. Rust et al.
NATURE METHODS (2006)
Secondary structure effects on DNA hybridization kinetics: a solution versus surface comparison
Yang Gao et al.
NUCLEIC ACIDS RESEARCH (2006)
DINAMelt web server for nucleic acid melting prediction
NR Markham et al.
NUCLEIC ACIDS RESEARCH (2005)
An algorithm for computing nucleic acid base-pairing probabilities including pseudoknots
RM Dirks et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Triggered amplification by hybridization chain reaction
RM Dirks et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
A partition function algorithm for nucleic acid secondary structure including pseudoknots
RM Dirks et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2003)
Toward fluorescence nanoscopy
SW Hell
NATURE BIOTECHNOLOGY (2003)
Share Paper
