4.2 Article

Gilbertaria, a first crustose genus in the Sphaerophoraceae (Lecanoromycetes, Ascomycota) for Catillaria contristans, Toninia squalescens and related species

Related references

Note: Only part of the references are listed.
Article Ecology

Convergence assessment for Bayesian phylogenetic analysis using MCMC simulation

Luiza Guimaraes Fabreti et al.

Summary: This study explores different methods for assessing convergence in phylogenetics, including deriving a threshold for minimum effective sample size and converting tree samples into traces of absence/presence of splits for standard ESS computation. The Kolmogorov-Smirnov test is suggested for assessing convergence in distribution between replicated MCMC runs, while potential scale reduction factor is deemed biased for skewed posterior distributions. Additionally, the study introduces a method for computing distribution of differences in split frequencies, highlighting the importance of using the 95% quantile for checking convergence in split frequencies.

METHODS IN ECOLOGY AND EVOLUTION (2022)

Article Plant Sciences

Lichens and associated fungi from Glacier Bay National Park, Alaska

Toby Spribille et al.

LICHENOLOGIST (2020)

Article Plant Sciences

Four new epiphytic species in the Micarea prasina group from Europe

Annina Launis et al.

LICHENOLOGIST (2019)

Article Biochemical Research Methods

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

Kazutaka Katoh et al.

BRIEFINGS IN BIOINFORMATICS (2019)

Article Mycology

Outline of Ascomycota: 2017

Nalin N. Wijayawardene et al.

FUNGAL DIVERSITY (2018)

Article Plant Sciences

A new Bunodophoron species (Sphaerophoraceae, Lecanorales) from the Neotropics

Edier Soto Medina et al.

LICHENOLOGIST (2018)

Editorial Material Plant Sciences

Extraction of DNA from lichen-forming and lichenicolous fungi: a low-cost fast protocol using Chelex

Zuzana Ferencova et al.

LICHENOLOGIST (2017)

Article Biochemical Research Methods

ModelFinder: fast model selection for accurate phylogenetic estimates

Subha Kalyaanamoorthy et al.

NATURE METHODS (2017)

Article Evolutionary Biology

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

Olga Chernomor et al.

SYSTEMATIC BIOLOGY (2016)

Article Biochemical Research Methods

PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences

Siavash Mirarab et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

Itamar Sela et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Biochemistry & Molecular Biology

A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families

Jolanta Miadlikowska et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

Robert Lanfear et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Letter Multidisciplinary Sciences

Reply to Kiss: Internal transcribed spacer (ITS) remains the best candidate as a universal DNA barcode marker for Fungi despite imperfections

Conrad L. Schoch et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Evolutionary Biology

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist et al.

SYSTEMATIC BIOLOGY (2012)

Article Plant Sciences

The genus Calycidium Stirt.

M Wedin

LICHENOLOGIST (2002)