Related references
Note: Only part of the references are listed.Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis
Anna Maria Ranzoni et al.
CELL STEM CELL (2021)
EBF1 and PAX5 control pro-B cell expansion via opposing regulation of the Myc gene
Rajesh Somasundaram et al.
BLOOD (2021)
Mouse multipotent progenitor 5 cells are located at the interphase between hematopoietic stem and progenitor cells
Pia Sommerkamp et al.
BLOOD (2021)
PU.1 enforces quiescence and limits hematopoietic stem cell expansion during inflammatory stress
James S. Chavez et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2021)
Inflammation, Aging and Hematopoiesis: A Complex Relationship
Pavlos Bousounis et al.
CELLS (2021)
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
Tianzhi Wu et al.
INNOVATION (2021)
BBKNN: fast batch alignment of single cell transcriptomes
Krzysztof Polanski et al.
BIOINFORMATICS (2020)
JASPAR 2020: update of the open-access database of transcription factor binding profiles
Oriol Fornes et al.
NUCLEIC ACIDS RESEARCH (2020)
Understanding intrinsic hematopoietic stem cell aging
Eva Mejia-Ramirez et al.
HAEMATOLOGICA (2020)
EBF1-deficient bone marrow stroma elicits persistent changes in HSC potential
Marta Derecka et al.
NATURE IMMUNOLOGY (2020)
Lineage tracing on transcriptional landscapes links state to fate during differentiation
Caleb Weinreb et al.
SCIENCE (2020)
C/EBPβ-Dependent Epigenetic Memory Induces Trained Immunity in Hematopoietic Stem Cells
Berengere de Laval et al.
CELL STEM CELL (2020)
Differential Alternative Polyadenylation Landscapes Mediate Hematopoietic Stem Cell Activation and Regulate Glutamine Metabolism
Pia Sommerkamp et al.
CELL STEM CELL (2020)
EBF1 and Pax5 safeguard leukemic transformation by limiting IL-7 signaling, Myc expression, and folate metabolism
Senthilkumar Ramamoorthy et al.
GENES & DEVELOPMENT (2020)
ATAC-seq footprinting unravels kinetics of transcription factor binding during zygotic genome activation
Mette Bentsen et al.
NATURE COMMUNICATIONS (2020)
A Prion-like Domain in Transcription Factor EBF1 Promotes Phase Separation and Enables B Cell Programming of Progenitor Chromatin
Yuanting Wang et al.
IMMUNITY (2020)
C/EBPα induces Ebf1 gene expression in common lymphoid progenitors
Theresa Barberi et al.
PLOS ONE (2020)
muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data
Helena L. Crowell et al.
NATURE COMMUNICATIONS (2020)
Common Sources of Inflammation and Their Impact on Hematopoietic Stem Cell Biology
Daniel Hormaechea-Agulla et al.
CURRENT STEM CELL REPORTS (2020)
Do haematopoietic stem cells age?
Kenneth Dorshkind et al.
NATURE REVIEWS IMMUNOLOGY (2020)
Single-Cell Proteomics Reveal that Quantitative Changes in Co-expressed Lineage-Specific Transcription Factors Determine Cell Fate
Carmen G. Palii et al.
CELL STEM CELL (2019)
Causes and Mechanisms of Hematopoietic Stem Cell Aging
Jungwoon Lee et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)
snakePipes: facilitating flexible, scalable and integrative epigenomic analysis
Vivek Bhardwaj et al.
BIOINFORMATICS (2019)
Comprehensive Integration of Single-Cell Data
Tim Stuart et al.
CELL (2019)
The regulatory control of Cebpa enhancers and silencers in the myeloid and red-blood cell lineages
Andrea Repele et al.
PLOS ONE (2019)
The ENCODE Blacklist: Identification of Problematic Regions of the Genome
Haley M. Amemiya et al.
SCIENTIFIC REPORTS (2019)
Machine learning predicts putative hematopoietic stem cells within large single-cell transcriptomics data sets
Fiona K. Hamey et al.
EXPERIMENTAL HEMATOLOGY (2019)
Decoding human fetal liver haematopoiesis
Dorin-Mirel Popescu et al.
NATURE (2019)
CRUP: a comprehensive framework to predict condition-specific regulatory units
Anna Ramisch et al.
GENOME BIOLOGY (2019)
From Louvain to Leiden: guaranteeing well-connected communities
V. A. Traag et al.
SCIENTIFIC REPORTS (2019)
Dynamic EBF1 occupancy directs sequential epigenetic and transcriptional events in B-cell programming
Rui Li et al.
GENES & DEVELOPMENT (2018)
Dissection of progenitor compartments resolves developmental trajectories in B-lymphopoiesis
Christina T. Jensen et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2018)
Myelopoiesis in the Context of Innate Immunity
Ioannis Mitroulis et al.
JOURNAL OF INNATE IMMUNITY (2018)
Clonal analysis of lineage fate in native haematopoiesis
Alejo E. Rodriguez-Fraticelli et al.
NATURE (2018)
Defining B Cell Chromatin: Lessons from EBF1
Soeren Boller et al.
TRENDS IN GENETICS (2018)
High-resolution TADs reveal DNA sequences underlying genome organization in flies
Fidel Ramirez et al.
NATURE COMMUNICATIONS (2018)
Enhancer and Transcription Factor Dynamics during Myeloid Differentiation Reveal an Early Differentiation Block in Cebpa null Progenitors
Sachin Pundhir et al.
CELL REPORTS (2018)
Differences in Cell Cycle Status Underlie Transcriptional Heterogeneity in the HSC Compartment
Felicia Kathrine Bratt Lauridsen et al.
CELL REPORTS (2018)
PU.1 is required for the Developmental Progression of Multipotent Progenitors to common lymphoid Progenitors
Swee Heng Milon Pang et al.
FRONTIERS IN IMMUNOLOGY (2018)
Progression from the Common Lymphoid Progenitor to B/Myeloid PreproB and ProB Precursors during B Lymphopoiesis Requires C/EBPα
Hong Guo et al.
JOURNAL OF IMMUNOLOGY (2018)
A Myc enhancer cluster regulates normal and leukaemic haematopoietic stem cell hierarchies
Carsten Bahr et al.
NATURE (2018)
SCANPY: large-scale single-cell gene expression data analysis
F. Alexander Wolf et al.
GENOME BIOLOGY (2018)
False discovery rates: a new deal
Matthew Stephens
BIOSTATISTICS (2017)
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
M. Ryan Corces et al.
NATURE METHODS (2017)
UROPA: a tool for Universal RObust Peak Annotation
Maria Kondili et al.
SCIENTIFIC REPORTS (2017)
Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data
Aaron T. L. Lun et al.
BIOSTATISTICS (2017)
MultiQC: summarize analysis results for multiple tools and samples in a single report
Philip Ewels et al.
BIOINFORMATICS (2016)
A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation
Sonia Nestorowa et al.
BLOOD (2016)
The analysis of novel distal Cebpa enhancers and silencers using a transcriptional model reveals the complex regulatory logic of hematopoietic lineage specification
Eric Bertolino et al.
DEVELOPMENTAL BIOLOGY (2016)
Macrophages: Key regulators of steady-state and demand-adapted hematopoiesis
Amanda McCabe et al.
EXPERIMENTAL HEMATOLOGY (2016)
Pioneering Activity of the C-Terminal Domain of EBF1 Shapes the Chromatin Landscape for B Cell Programming
Soeren Boller et al.
IMMUNITY (2016)
Distinct myeloid progenitor-differentiation pathways identified through single-cell RNA sequencing
Roy Drissen et al.
NATURE IMMUNOLOGY (2016)
deepTools2: a next generation web server for deep-sequencing data analysis
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2016)
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
Maxim V. Kuleshov et al.
NUCLEIC ACIDS RESEARCH (2016)
In Vivo Deletion of the Cebpa+37 kb Enhancer Markedly Reduces Cebpa mRNA in Myeloid Progenitors but Not in Non-Hematopoietic Tissues to Impair Granulopoiesis
Hong Guo et al.
PLOS ONE (2016)
Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors
Franziska Paul et al.
CELL (2015)
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
Evan Z. Macosko et al.
CELL (2015)
Hematopoietic Differentiation Is Required for Initiation of Acute Myeloid Leukemia
Min Ye et al.
CELL STEM CELL (2015)
Functionally Distinct Subsets of Lineage-Biased Multipotent Progenitors Control Blood Production in Normal and Regenerative Conditions
Eric M. Pietras et al.
CELL STEM CELL (2015)
Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations
Nicola K. Wilson et al.
CELL STEM CELL (2015)
Hind limb unloading, a model of spaceflight conditions, leads to decreased B lymphopoiesis similar to aging
Chloe Lescale et al.
FASEB JOURNAL (2015)
The+37 kb Cebpa Enhancer Is Critical for Cebpa Myeloid Gene Expression and Contains Functional Sites that Bind SCL, GATA2, C/EBPα, PU.1, and Additional Ets Factors
Stacy Cooper et al.
PLOS ONE (2015)
CD41 Marks the Initial Myelo-Erythroid Lineage Specification in Adult Mouse Hematopoiesis: Redefinition of Murine Common Myeloid Progenitor
Kohta Miyawaki et al.
STEM CELLS (2015)
Primed and ready: understanding lineage commitment through single cell analysis
Rachael A. Nimmo et al.
TRENDS IN CELL BIOLOGY (2015)
WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis
Daniel R. Zerbino et al.
BIOINFORMATICS (2014)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
Identification of Regulatory Networks in HSCs and Their Immediate Progeny via Integrated Proteome, Transcriptome, and DNA Methylome Analysis
Nina Cabezas-Wallscheid et al.
CELL STEM CELL (2014)
Reduced Lymphoid Lineage Priming Promotes Human Hematopoietic Stem Cell Expansion
Peter van Galen et al.
CELL STEM CELL (2014)
Pro-inflammatory cytokines: Emerging players regulating HSC function in normal and diseased hematopoiesis
Cristina Mirantes et al.
EXPERIMENTAL CELL RESEARCH (2014)
Chromatin state dynamics during blood formation
David Lara-Astiaso et al.
SCIENCE (2014)
C/EBP alpha Is Required for Long-Term Self-Renewal and Lineage Priming of Hematopoietic Stem Cells and for the Maintenance of Epigenetic Configurations in Multipotent Progenitors
Marie S. Hasemann et al.
PLOS GENETICS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
CD41 expression marks myeloid-biased adult hematopoietic stem cells and increases with age
Christos Gekas et al.
BLOOD (2013)
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
Edward Y. Chen et al.
BMC BIOINFORMATICS (2013)
Clonal Analysis Unveils Self-Renewing Lineage-Restricted Progenitors Generated Directly from Hematopoietic Stem Cells
Ryo Yamamoto et al.
CELL (2013)
Aging of the hematopoietic system
Hans-Willem Snoeck
CURRENT OPINION IN HEMATOLOGY (2013)
Impaired B lymphopoiesis in old age: a role for inflammatory B cells?
Richard L. Riley
IMMUNOLOGIC RESEARCH (2013)
Early B-cell Factor 1 Regulates the Expansion of B-cell Progenitors in a Dose-dependent Manner
Josefine Ahsberg et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
C/EBPa controls acquisition and maintenance of adult haematopoietic stem cell quiescence
Min Ye et al.
NATURE CELL BIOLOGY (2013)
Transcription factor EBF1 is essential for the maintenance of B cell identity and prevention of alternative fates in committed cells
Robert Nechanitzky et al.
NATURE IMMUNOLOGY (2013)
Hematopoietic progenitor cell lines with myeloid and lymphoid potential
Vanessa Redecke et al.
NATURE METHODS (2013)
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
Jason D. Buenrostro et al.
NATURE METHODS (2013)
Snakemake-a scalable bioinformatics workflow engine
Johannes Koester et al.
BIOINFORMATICS (2012)
Transcription factor Ebf1 regulates differentiation stage-specific signaling, proliferation, and survival of B cells
Ildiko Gyoery et al.
GENES & DEVELOPMENT (2012)
Ikaros represses and activates PU.1 cell-type-specifically through the multifunctional Sfpi1 URE and a myeloid specific enhancer
M. A. Zarnegar et al.
ONCOGENE (2012)
Positive intergenic feedback circuitry, involving EBF1 and FOXO1, orchestrates B-cell fate
Robert Mansson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A dose-dependent role for EBF1 in repressing non-B-cell-specific genes
Kara Lukin et al.
EUROPEAN JOURNAL OF IMMUNOLOGY (2011)
Multilineage Priming of Enhancer Repertoires Precedes Commitment to the B and Myeloid Cell Lineages in Hematopoietic Progenitors
Elinore M. Mercer et al.
IMMUNITY (2011)
CCAAT/enhancer binding protein α (C/EBPα)-induced transdifferentiation of pre-B cells into macrophages involves no overt retrodifferentiation
Alessandro Di Tullio et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The transcription factors E2A and HEB act in concert to induce the expression of FOXO1 in the common lymphoid progenitor
Eva Welinder et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Reduced EBF expression underlies loss of B-cell potential of hematopoietic progenitors with age
Chloe Lescale et al.
AGING CELL (2010)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data
Robert C. McLeay et al.
BMC BIOINFORMATICS (2010)
Early B Cell Factor 1 Regulates B Cell Gene Networks by Activation, Repression, and Transcription-Independent Poising of Chromatin
Thomas Treiber et al.
IMMUNITY (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate
Yin C. Lin et al.
NATURE IMMUNOLOGY (2010)
A Robust and Highly Efficient Immune Cell Reprogramming System
Lars H. Bussmann et al.
CELL STEM CELL (2009)
Ly6d marks the earliest stage of B-cell specification and identifies the branchpoint between B-cell and T-cell development
Matthew A. Inlay et al.
GENES & DEVELOPMENT (2009)
A Recurrent Network Involving the Transcription Factors PU.1 and Gfi1 Orchestrates Innate and Adaptive Immune Cell Fates
Chauncey J. Spooner et al.
IMMUNITY (2009)
Analysis of histone 2B-GFP retention reveals slowly cycling hematopoietic stem cells
Adlen Foudi et al.
NATURE BIOTECHNOLOGY (2009)
Hematopoiesis: An evolving paradigm for stem cell biology
Stuart H. Orkin et al.
CELL (2008)
Fate Tracing Reveals the Endothelial Origin of Hematopoietic Stem Cells
Ann C. Zovein et al.
CELL STEM CELL (2008)
Regulation of B cell fate commitment and immunoglobulin heavy-chain gene rearrangements by Ikaros
Damien Reynaud et al.
NATURE IMMUNOLOGY (2008)
Transcription factor EBF restricts alternative lineage options and promotes B cell fate commitment independently of Pax5
Jagan M. R. Pongubala et al.
NATURE IMMUNOLOGY (2008)
PUA and C/EBPα/β convert fibroblasts into macrophage-like cells
Ru Feng et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Elucidation of the phenotypic, functional, and molecular topography of a myeloerythroid progenitor cell hierarchy
Cornelis J. H. Pronk et al.
CELL STEM CELL (2007)
Conversion of mature B cells into T cells by dedifferentiation to uncommitted progenitors
Cesar Cobaleda et al.
NATURE (2007)
The transcriptional repressor GFI-1 antagonizes PU.1 activity through protein-protein lnteraction
Richard Dahl et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Distinct promoters mediate the regulation of Ebf1 gene expression by interleukin-7 and Pax5
Stephanie Roessler et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Multilineage transcriptional priming and determination of alternate hematopoietic cell fates
Peter Laslo et al.
CELL (2006)
Comprehensive analysis of myeloid lineage conversion using mice expressing an inducible form of C/EBPα
Yumi Fukuchi et al.
EMBO JOURNAL (2006)
Early hematopoietic lineage restrictions directed by Ikaros
T Yoshida et al.
NATURE IMMUNOLOGY (2006)
Global analysis of proliferation and cell cycle gene expression in the regulation of hematopoietic stem and progenitor cell fates
E Passegué et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2005)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Distinctive and indispensable roles of PU.1 in maintenance of hematopoietic stem cells and their differentiation
H Iwasaki et al.
BLOOD (2005)
IL-7 receptor signaling is necessary for stage transition in adult B cell development through up-regulation of EBF
K Kikuchi et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2005)
Interleukin-7 is necessary to maintain the B cell potential in common lymphoid progenitors
S Dias et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2005)
Early B cell factor promotes B lymphopoiesis with reduced interleukin 7 responsiveness in the absence of E2A
CS Seet et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2004)
Stepwise reprogramming of B cells into macrophages
HF Xie et al.
CELL (2004)
Assembling a gene regulatory network for specification of the B cell fate
KL Medina et al.
DEVELOPMENTAL CELL (2004)
Enforced expression of EBF in hematopoietic stem cells restricts lymphopoiesis to the B cell lineage
Z Zhang et al.
EMBO JOURNAL (2003)
PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
VK Mootha et al.
NATURE GENETICS (2003)
Reversion of B cell commitment upon loss of Pax5 expression
I Mikkola et al.
SCIENCE (2002)
Myeloid or lymphoid promiscuity as a critical step in hematopoietic lineage commitment
T Miyamoto et al.
DEVELOPMENTAL CELL (2002)
Tie2-Cre transgenic mice:: A new model for endothelial cell-lineage analysis in vivo
YY Kisanuki et al.
DEVELOPMENTAL BIOLOGY (2001)
Regulation of B lymphocyte and macrophage development by graded expression of PU.1
RP DeKoter et al.
SCIENCE (2000)
Share Paper
