Related references
Note: Only part of the references are listed.TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes
Jan P. Meier-Kolthoff et al.
NUCLEIC ACIDS RESEARCH (2022)
Description of Clavibacter zhangzhiyongii sp. nov., a phytopathogenic actinobacterium isolated from barley seeds, causing leaf brown spot and decline
Qian Tian et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2021)
Prokaryotic taxonomy and nomenclature in the age of big sequence data
Philip Hugenholtz et al.
ISME JOURNAL (2021)
Comparative Genomics and Phylogenetic Analyses Suggest Several Novel Species within the Genus Clavibacter, Including Nonpathogenic Tomato-Associated Strains
Ebrahim Osdaghi et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2020)
Comparative Genomics of Pathogenic Clavibacter michiganensis subsp. michiganensis Strains from Chile Reveals Potential Virulence Features for Tomato Plants
Valentina Mendez et al.
MICROORGANISMS (2020)
International Code of Nomenclature of Prokaryotes Prokaryotic Code (2008 Revision)
Charles T. Parker et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
I-Min A. Chen et al.
NUCLEIC ACIDS RESEARCH (2019)
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
Alexey M. Kozlov et al.
BIOINFORMATICS (2019)
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
Jan P. Meier-Kolthoff et al.
NATURE COMMUNICATIONS (2019)
Re-classification of Clavibacter michiganensis subspecies on the basis of whole-genome and multi-locus sequence analyses
Xiang Li et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)
Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI
Stacy Ciufo et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)
Comparative Genomic Analyses of Clavibacter michiganensis subsp insidiosus and Pathogenicity on Medicago truncatula
You Lu et al.
PHYTOPATHOLOGY (2018)
Genome-Based Taxonomic Classification of the Phylum Actinobacteria
Imen Nouioui et al.
FRONTIERS IN MICROBIOLOGY (2018)
Using Core Genome Alignments To Assign Bacterial Species
Matthew Chung et al.
MSYSTEMS (2018)
Draft Genome Sequences of the Type Strains of Three Clavibacter Subspecies and Atypical Peach-Colored Strains Isolated from Tomato
Ebrahim Osdaghi et al.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2018)
Genomic Analysis of Clavibacter michiganensis Reveals Insight Into Virulence Strategies and Genetic Diversity of a Gram-Positive Bacterial Pathogen
Shree P. Thapa et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2017)
Clavibacter michiganensis subsp capsici subsp nov., causing bacterial canker disease in pepper
Eom-Ji Oh et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)
NCBI prokaryotic genome annotation pipeline
Tatiana Tatusova et al.
NUCLEIC ACIDS RESEARCH (2016)
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
BIOINFORMATICS (2015)
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
Marcel Huntemann et al.
STANDARDS IN GENOMIC SCIENCES (2015)
Seed-associated subspecies of the genus Clavibacter are clearly distinguishable from Clavibacter michiganensis subsp michiganensis
Jarred Yasuhara-Bell et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
Thomas Brettin et al.
SCIENTIFIC REPORTS (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle
Joanna Zaluga et al.
BMC GENOMICS (2014)
Clavibacter michiganensis subsp phaseoli subsp nov., pathogenic in bean
Ana J. Gonzalez et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)
Genome sequence-based species delimitation with confidence intervals and improved distance functions
Jan P. Meier-Kolthoff et al.
BMC BIOINFORMATICS (2013)
Genetic diversity of non-pathogenic Clavibacter strains isolated from tomato seeds
Joanna Zaluga et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2013)
Phylogenetic Analysis and Polyphasic Characterization of Clavibacter michiganensis Strains Isolated from Tomato Seeds Reveal that Nonpathogenic Strains Are Distinct from C. michiganensis subsp michiganensis
Marie-Agnes Jacques et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Prokaryotic taxonomy in the sequencing era - the polyphasic approach revisited
Peter Kaempfer et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
The Clavibacter michiganensis Subspecies: Molecular Investigation of Gram-Positive Bacterial Plant Pathogens
Rudolf Eichenlaub et al.
ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 49 (2011)
Clavibacter michiganensis subsp michiganensis, a Seedborne Tomato Pathogen: Healthy Seeds Are Still the Goal
Leandro de Leon et al.
PLANT DISEASE (2011)
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
Alexander F. Auch et al.
STANDARDS IN GENOMIC SCIENCES (2010)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
Shifting the genomic gold standard for the prokaryotic species definition
Michael Richter et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
Johan Goris et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)
Genomic insights that advance the species definition for prokaryotes
KT Konstantinidis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Share Paper
