4.7 Article

The Spike Mutants Website: A Worldwide Used Resource against SARS-CoV-2

Journal

Publisher

MDPI
DOI: 10.3390/ijms232113082

Keywords

spike; SARS-CoV-2; COVID-19; variants; molecular dynamics; mutations

Funding

  1. EU [101003551]
  2. Tunisian Ministry of Higher Education and Scientific Research
  3. 'Departments of Excellence-20180 Program (Dipartimenti di Eccellenza) of the Italian Ministry of Education, University and Research, DIBAF-Department of University of Tuscia, Project 'Landscape 4.0-food, wellbeing and environment'
  4. Ministero della Salute, 5 per Mille-Project [5M-2020-23682104]

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The large number of SARS-CoV-2 mutations has prompted scientific research on vaccines and drugs. The Spike Mutants website provides structural information and molecular dynamics trajectories of the spike protein and its variants, serving as a tool for investigating the impact of novel mutations and accelerating drug discovery.
A large number of SARS-CoV-2 mutations in a short period of time has driven scientific research related to vaccines, new drugs, and antibodies to combat the new variants of the virus. Herein, we present a web portal containing the structural information, the tridimensional coordinates, and the molecular dynamics trajectories of the SARS-CoV-2 spike protein and its main variants. The Spike Mutants website can serve as a rapid online tool for investigating the impact of novel mutations on virus fitness. Taking into account the high variability of SARS-CoV-2, this application can help the scientific community when prioritizing molecules for experimental assays, thus, accelerating the identification of promising drug candidates for COVID-19 treatment. Below we describe the main features of the platform and illustrate the possible applications for speeding up the drug discovery process and hypothesize new effective strategies to overcome the recurrent mutations in SARS-CoV-2 genome.

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