4.7 Article

Functional and Structural Characterization of OXA-935, a Novel OXA-10-Family β-Lactamase from Pseudomonas aeruginosa

Journal

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
Volume 66, Issue 10, Pages -

Publisher

AMER SOC MICROBIOLOGY
DOI: 10.1128/aac.00985-22

Keywords

Pseudomonas aeruginosa; OXA-beta-lactamase; antimicrobial resistance; ceftazidime; crystal structure

Funding

  1. National Institutes of Health (NIH)/National Institute of Allergy and Infectious Diseases (NIAID) [R01 AI118257, R01 AI053674, U19 AI135964, K24 104831, R21 AI129167]
  2. NIH/National Institute of General Medical Sciences (NIGMS) [T32 GM008061, T32 GM008152]
  3. American Cancer Society (ACS) Postdoctoral Fellowship [130602-PF-17-107-01-MPC]
  4. ACS Clinician Scientist Development Grant [134251-CSDG-20-053-01-MPC]
  5. NIAID from the NIH, Department of Health and Human Services [HHSN27201700060C, U01AI124316, R01 GM05789]
  6. National Institute of Medical Sciences from the NIH, Department of Health and Human Services [GM118187]
  7. DOE Office of Science [DE-AC02-06CH11357]
  8. Michigan Economic Development Corporation
  9. Michigan Technology Tri-Corridor [085P1000817]
  10. Northwestern University NUSeq Core Facility
  11. Northwestern University Structural Biology Facility
  12. Northwestern University High Throughput Analysis Laboratory
  13. NCI CCSG [P30 CA060553]
  14. Feinberg School of Medicine
  15. Center for Genetic Medicine
  16. Feinberg's Department of Biochemistry and Molecular Genetics, Office of the Provost, Office for Research
  17. Northwestern Information Technology

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Resistance to antipseudomonal penicillins and cephalosporins in Pseudomonas aeruginosa is often driven by the overproduction of AmpC beta-lactamase and OXA-10-family beta-lactamases. This study identified a novel allele of bla(OX)(A-10), named bla(OX)(A-935), which confers ceftazidime resistance and showed increased catalytic efficiency for ceftazidime compared to OXA-14. Crystal structures of OXA-14 and OXA-935 revealed that the F153S mutation in OXA-935 increases flexibility in the omega loop. Considering the reliance on novel beta-lactam/beta-lactamase inhibitor combinations, the amino acid changes in OXA-10-family beta-lactamases are of concern.
Resistance to antipseudomonal penicillins and cephalosporins is often driven by the overproduction of the intrinsic beta-lactamase AmpC. However, OXA-10-family beta-lactamases are a rich source of resistance in Pseudomonas aeruginosa. OXA beta-lactamases have a propensity for mutation that leads to extended spectrum cephalosporinase and carbapenemase activity. In this study, we identified isolates from a subclade of the multidrug-resistant (MDR) high risk P. aeruginosa clonal complex CC446 with a resistance to ceftazidime. A genomic analysis revealed that these isolates harbored a plasmid containing a novel allele of bla(OX)(A-10), named bla(OX)(A-935), which was predicted to produce an OXA-10 variant with two amino acid substitutions: an aspartic acid instead of a glycine at position 157 and a serine instead of a phenylalanine at position 153. The G157D mutation, present in OXA-14, is associated with the resistance of P. aeruginosa to ceftazidime. Compared to OXA-14, OXA-935 showed increased catalytic efficiency for ceftazidime. The deletion of bla(OXA-9)(35) restored the sensitivity to ceftazidime, and susceptibility profiling of P. aeruginosa laboratory strains expressing bla(OX)(A-)(935) revealed that OXA-935 conferred ceftazidime resistance. To better understand the impacts of the variant amino acids, we determined the crystal structures of OXA-14 and OXA-935. Compared to OXA-14, the F153S mutation in OXA-935 conferred increased flexibility in the omega (Omega) loop. Amino acid changes that confer extended spectrum cephalosporinase activity to OXA-10-family ,beta-lactamases are concerning, given the rising reliance on novel beta-lactam/beta-lactamase inhibitor combinations, such as ceftolozane-tazobactam and ceftazidime-avibactam, to treat MDR P. aeruginosa infections.

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