4.7 Article

Lymphocyte subsets in Atlantic cod (Gadus morhua) interrogated by single-cell sequencing

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Integrated analysis of multimodal single-cell data

Yuhan Hao et al.

Summary: The study introduces a weighted-nearest neighbor analysis framework to learn the relative utility of each data type in each cell, enabling integrative analysis of multiple modalities. Applied to a CITE-seq dataset, the method constructs a multimodal reference atlas of the circulating immune system and successfully identifies and validates previously unreported lymphoid subpopulations.
Article Biochemistry & Molecular Biology

ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

Diego Darriba et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Article Multidisciplinary Sciences

Evolution of male pregnancy associated with remodeling of canonical vertebrate immunity in seahorses and pipefishes

Olivia Roth et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

The immunogenetics of sexual parasitism

Jeremy B. Swann et al.

SCIENCE (2020)

Review Immunology

Phenotypes, Functions, and Clinical Relevance of Regulatory B Cells in Cancer

Jin Shang et al.

FRONTIERS IN IMMUNOLOGY (2020)

Article Biochemical Research Methods

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

Alexey M. Kozlov et al.

BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

Comprehensive Integration of Single-Cell Data

Tim Stuart et al.

Article Biotechnology & Applied Microbiology

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

Kelly Street et al.

BMC GENOMICS (2018)

Article Biotechnology & Applied Microbiology

Integrating single-cell transcriptomic data across different conditions, technologies, and species

Andrew Butler et al.

NATURE BIOTECHNOLOGY (2018)

Review Immunology

A cold-blooded view of adaptive immunity

Martin F. Flajnik

NATURE REVIEWS IMMUNOLOGY (2018)

Article Biochemical Research Methods

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R

Davis J. McCarthy et al.

BIOINFORMATICS (2017)

Article Biotechnology & Applied Microbiology

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod

Ole K. Torresen et al.

BMC GENOMICS (2017)

Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Genetics & Heredity

Evolution of the immune system influences speciation rates in teleost fishes

Martin Malmstrom et al.

NATURE GENETICS (2016)

Article Biochemistry & Molecular Biology

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

Evan Z. Macosko et al.

Article Biotechnology & Applied Microbiology

Spatial reconstruction of single-cell gene expression data

Rahul Satija et al.

NATURE BIOTECHNOLOGY (2015)

Review Immunology

GATA-3 Function in Innate and Adaptive Immunity

Irma Tindemans et al.

IMMUNITY (2014)

Article Medicine, Research & Experimental

TACI deficiency enhances antibody avidity and clearance of an intestinal pathogen

Shoichiro Tsuji et al.

JOURNAL OF CLINICAL INVESTIGATION (2014)

Review Immunology

Evolution of innate immunity: clues from invertebrates via fish to mammals

Kurt Buchmann

FRONTIERS IN IMMUNOLOGY (2014)

Review Fisheries

Dissecting teleost B cell differentiation using transcription factors

Patty Zwollo

DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2011)

Article Multidisciplinary Sciences

The genome sequence of Atlantic cod reveals a unique immune system

Bastiaan Star et al.

NATURE (2011)

Article Evolutionary Biology

Evolution of the CD163 family and its relationship to the bovine gamma delta T cell co-receptor WC1

Carolyn T. A. Herzig et al.

BMC EVOLUTIONARY BIOLOGY (2010)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Natural antibodies of cod (Gadus morhua L.): Specificity, activity and affinity

Bergjot Magnadottir et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Profiling gene expression in the spleen of Atlantic cod, Gadus morhua upon vaccination with Vibrio anguillarum antigen

Christopher Marlowe A. Caipang et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY (2009)

Article Fisheries

Specific and natural antibody response of cod juveniles vaccinated against Vibrio anguillarum

S. Gudmundsdottir et al.

FISH & SHELLFISH IMMUNOLOGY (2009)

Review Biochemistry & Molecular Biology

Monocyte Chemoattractant Protein-1 (MCP-1): An Overview

Satish L. Deshmane et al.

JOURNAL OF INTERFERON AND CYTOKINE RESEARCH (2009)

Review Immunology

Pax5: the guardian of B cell identity and function

Cesar Cobaleda et al.

NATURE IMMUNOLOGY (2007)

Article Multidisciplinary Sciences

Ebp1 isoforms distinctively regulate cell survival and differentiation

Zhixue Liu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

Selection of evolutionarily conserved mucosal-associated invariant T cells by MR1

E Treiner et al.

NATURE (2003)

Review Cell Biology

AP-1 as a regulator of cell life and death

E Shaulian et al.

NATURE CELL BIOLOGY (2002)

Article Immunology

Regulation of the T-independent humoral response by TACI

GU von Bülow et al.

IMMUNITY (2001)

Article Multidisciplinary Sciences

Identification of the haemoglobin scavenger receptor

M Kristiansen et al.

NATURE (2001)