Related references
Note: Only part of the references are listed.The microbiome of the buffalo digestive tract
Feng Tong et al.
NATURE COMMUNICATIONS (2022)
Rumen fluid transplantation affects growth performance of weaned lambs by altering gastrointestinal microbiota, immune function and feed digestibility
X. Yin et al.
ANIMAL (2021)
Effect of probiotic Lactobacillus plantarum Dad-13 powder consumption on the gut microbiota and intestinal health of overweight adults
Endang Sutriswati Rahayu et al.
WORLD JOURNAL OF GASTROENTEROLOGY (2021)
Longitudinal evaluation of fecal microbiota transplantation for ameliorating calf diarrhea and improving growth performance
Hyun Sik Kim et al.
NATURE COMMUNICATIONS (2021)
Opportunities and Challenges for Improving the Productivity of Swamp Buffaloes in Southeastern Asia
Paulene S. Pineda et al.
FRONTIERS IN GENETICS (2021)
Whole-Genome Sequencing and Characterization of Buffalo Genetic Resources: Recent Advances and Future Challenges
Saif Ur Rehman et al.
ANIMALS (2021)
Metagenomics analysis revealed the distinctive ruminal microbiome and resistive profiles in dairy buffaloes
Hui-Zeng Sun et al.
ANIMAL MICROBIOME (2021)
Asian water buffalo: domestication, history and genetics
Y. Zhang et al.
ANIMAL GENETICS (2020)
Rumen function in goats, an example of adaptive capacity
Sylvie Giger-Reverdin et al.
JOURNAL OF DAIRY RESEARCH (2020)
Intranasal Bacterial Therapeutics Reduce Colonization by the Respiratory Pathogen Mannheimia haemolytica in Dairy Calves
Samat Amat et al.
MSYSTEMS (2020)
Stochasticity constrained by deterministic effects of diet and age drive rumen microbiome assembly dynamics
Ori Furman et al.
NATURE COMMUNICATIONS (2020)
Multi-omics reveals that the rumen microbiome and its metabolome together with the host metabolome contribute to individualized dairy cow performance
Ming-Yuan Xue et al.
MICROBIOME (2020)
Dynamic change of the gastrointestinal bacterial ecology in cows from birth to adulthood
Chun Y. Guo et al.
MICROBIOLOGYOPEN (2020)
Rumen-derived lipopolysaccharide induced ruminal epithelium barrier damage in goats fed a high-concentrate diet
Kai Zhang et al.
MICROBIAL PATHOGENESIS (2019)
Bacteroidetes use thousands of enzyme combinations to break down glycans
Pascal Lapebie et al.
NATURE COMMUNICATIONS (2019)
The Association Between Inflammaging and Age-Related Changes in the Ruminal and Fecal Microbiota Among Lactating Holstein Cows
Guoxing Zhang et al.
FRONTIERS IN MICROBIOLOGY (2019)
Characterization and Comparison of Microbiota in the Gastrointestinal Tracts of the Goat (Capra hircus) During Preweaning Development
Bibo Li et al.
FRONTIERS IN MICROBIOLOGY (2019)
Effects of live yeast on differential genetic and functional attributes of rumen microbiota in beef cattle
Ibukun M. Ogunade et al.
JOURNAL OF ANIMAL SCIENCE AND BIOTECHNOLOGY (2019)
Identification of Novel Putative Bacterial Feruloyl Esterases From Anaerobic Ecosystems by Use of Whole-Genome Shotgun Metagenomics and Genome Binning
Kamyar Mogodiniyai Kasmaei et al.
FRONTIERS IN MICROBIOLOGY (2019)
Metagenomic characterisation of ruminal bacterial diversity in buffaloes from birth to adulthood using 16S rRNA gene amplicon sequencing
Prakash G. Koringa et al.
FUNCTIONAL & INTEGRATIVE GENOMICS (2019)
Senescence and aging: Causes, consequences, and therapeutic avenues
Domhnall McHugh et al.
JOURNAL OF CELL BIOLOGY (2018)
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
BIOINFORMATICS (2018)
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
Robert D. Stewart et al.
NATURE COMMUNICATIONS (2018)
Probiotic properties of native Lactobacillus spp. strains for dairy calves
S. Fernandez et al.
BENEFICIAL MICROBES (2018)
Assessment of microbiome changes after rumen transfaunation: implications on improving feed efficiency in beef cattle
Mi Zhou et al.
MICROBIOME (2018)
Nuclear Genomic Instability and Aging
Laura J. Niedernhofer et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 87 (2018)
Bacterial Community Dynamics across the Gastrointestinal Tracts of Dairy Calves during Preweaning Development
Juliana Dias et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)
A metagenomic analysis of the camel rumen's microbiome identifies the major microbes responsible for lignocellulose degradation and fermentation
Javad Gharechahi et al.
BIOTECHNOLOGY FOR BIOFUELS (2018)
Characterization and anti-salmonella activities of lactic acid bacteria isolated from cattle faeces
Adewale Adetoye et al.
BMC MICROBIOLOGY (2018)
The composition of the perinatal intestinal microbiota in cattle
Mohammad Jaber Alipour et al.
SCIENTIFIC REPORTS (2018)
Involvement of Two-Component Signaling on Bacterial Motility and Biofilm Development
Birgit M. Pruss
JOURNAL OF BACTERIOLOGY (2017)
Role of Age-Related Shifts in Rumen Bacteria and Methanogens in Methane Production in Cattle
Chong Liu et al.
FRONTIERS IN MICROBIOLOGY (2017)
Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome
Yunzeng Zhang et al.
MICROBIOME (2017)
Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation
Kimberly A. Dill-McFarland et al.
SCIENTIFIC REPORTS (2017)
Characterization of the rumen microbial community composition of buffalo breeds consuming diets typical of dairy production systems in Southern China
Bo Lin et al.
ANIMAL FEED SCIENCE AND TECHNOLOGY (2015)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
Potential functional gene diversity involved in methanogenesis and methanogenic community structure in Indian buffalo (Bubalus bubalis) rumen
Krishna M. Singh et al.
JOURNAL OF APPLIED GENETICS (2015)
Associative patterns among anaerobic fungi, methanogenic archaea, and bacterial communities in response to changes in diet and age in the rumen of dairy cows
Sanjay Kumar et al.
FRONTIERS IN MICROBIOLOGY (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
Determinants for the improved thermostability of a mesophilic family 11 xylanase predicted by computational methods
Huimin Zhang et al.
BIOTECHNOLOGY FOR BIOFUELS (2014)
Human Genetics Shape the Gut Microbiome
Julia K. Goodrich et al.
CELL (2014)
Insights into the structure and function of fungal β-mannosidases from glycoside hydrolase family 2 based on multiple crystal structures of the Trichoderma harzianum enzyme
Alessandro S. Nascimento et al.
FEBS JOURNAL (2014)
Microbial and Carbohydrate Active Enzyme profile of buffalo rumen metagenome and their alteration in response to variation in the diet
Dishita D. Patel et al.
GENE (2014)
Metagenome of Mehsani Buffalo Rumen Microbiota: An Assessment of Variation in Feed-Dependent Phylogenetic and Functional Classification
Nidhi R. Parmar et al.
JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY (2014)
The carbohydrate-active enzymes database (CAZy) in 2013
Vincent Lombard et al.
NUCLEIC ACIDS RESEARCH (2014)
Niche and host-associated functional signatures of the root surface microbiome
Maya Ofek-Lalzar et al.
NATURE COMMUNICATIONS (2014)
Early Methanogenic Colonisation in the Faeces of Meishan and Yorkshire Piglets as Determined by Pyrosequencing Analysis
Yong Su et al.
ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL (2014)
High Potential Source for Biomass Degradation Enzyme Discovery and Environmental Aspects Revealed through Metagenomics of Indian Buffalo Rumen
K. M. Singh et al.
BIOMED RESEARCH INTERNATIONAL (2014)
High-throughput Methods Redefine the Rumen Microbiome and Its Relationship with Nutrition and Metabolism
Joshua C. McCann et al.
BIOINFORMATICS AND BIOLOGY INSIGHTS (2014)
Exploring the bovine rumen bacterial community from birth to adulthood
Elie Jami et al.
ISME JOURNAL (2013)
Lactobacillus fermentum and Lactobacillus amylovorus as probiotics alter body adiposity and gut microflora in healthy persons
Jaclyn M. Omar et al.
JOURNAL OF FUNCTIONAL FOODS (2013)
Microbiota and healthy ageing: observational and nutritional intervention studies
Harald Bruessow
MICROBIAL BIOTECHNOLOGY (2013)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools
Robert W. Li et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Insertion depth of oral stomach tubes may affect the fermentation parameters of ruminal fluid collected in dairy cows
J. S. Shen et al.
JOURNAL OF DAIRY SCIENCE (2012)
Metagenomic analysis of Surti buffalo (Bubalus bubalis) rumen: a preliminary study
Krishna M. Singh et al.
MOLECULAR BIOLOGY REPORTS (2012)
Comparison of ruminal fermentation characteristics and microbial population in swamp buffalo and cattle
V. Chanthakhoun et al.
LIVESTOCK SCIENCE (2012)
Composition and Similarity of Bovine Rumen Microbiota across Individual Animals
Elie Jami et al.
PLOS ONE (2012)
Methanogen diversity in the rumen of Indian Surti buffalo (Bubalus bubalis), assessed by 16S rDNA analysis
K. M. Singh et al.
RESEARCH IN VETERINARY SCIENCE (2012)
Nutrient digestibility and ruminal fermentation characteristic in swamp buffaloes fed on chemically treated rice straw and urea
Vinh Thi Nguyen et al.
TROPICAL ANIMAL HEALTH AND PRODUCTION (2012)
Development and genetic influence of the rectal bacterial flora of newborn calves
M. Mayer et al.
VETERINARY MICROBIOLOGY (2012)
Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans
Reiner Jumpertz et al.
AMERICAN JOURNAL OF CLINICAL NUTRITION (2011)
Performance and plasma metabolites of dairy calves fed starter containing sodium butyrate, calcium propionate or sodium monensin
L. S. Ferreira et al.
ANIMAL (2011)
Methanogen community structure in the rumens of farmed sheep, cattle and red deer fed different diets
Jeyamalar Jeyanathan et al.
FEMS MICROBIOLOGY ECOLOGY (2011)
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
Chen Xie et al.
NUCLEIC ACIDS RESEARCH (2011)
Metagenomic biomarker discovery and explanation
Nicola Segata et al.
GENOME BIOLOGY (2011)
Bacterial diversity in the rumen of Indian Surti buffalo (Bubalus bubalis), assessed by 16S rDNA analysis
P. R. Pandya et al.
JOURNAL OF APPLIED GENETICS (2010)
Methanogens: Methane Producers of the Rumen and Mitigation Strategies
Sarah E. Hook et al.
ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL (2010)
SOAP2: an improved ultrafast tool for short read alignment
Ruiqiang Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Use of Real-Time PCR Technique in Studying Rumen Cellulolytic Bacteria Population as Affected by Level of Roughage in Swamp Buffalo
Metha Wanapat et al.
CURRENT MICROBIOLOGY (2009)
Dominance of Methanomicrobium phylotype in methanogen population present in Murrah buffaloes (Bubalus bubalis)
P. P. Chaudhary et al.
LETTERS IN APPLIED MICROBIOLOGY (2009)
Structure of the archaeal community of the rumen
Peter H. Janssen et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Methanobrevibacter phylotypes are the dominant methanogens in sheep from Venezuela
Andre-Denis G. Wright et al.
MICROBIAL ECOLOGY (2008)
eggNOG: automated construction and annotation of orthologous groups of genes
Lars Juhl Jensen et al.
NUCLEIC ACIDS RESEARCH (2008)
MetaGene: prokaryotic gene finding from environmental genome shotgun sequences
Hideki Noguchi et al.
NUCLEIC ACIDS RESEARCH (2006)
Opportunities to improve fiber degradation in the rumen: microbiology, ecology, and genomics
DO Krause et al.
FEMS MICROBIOLOGY REVIEWS (2003)