4.7 Article

Three-dimensional structure determination of gold nanotriangles in solution using X-ray free-electron laser single-particle analysis

Related references

Note: Only part of the references are listed.
Article Optics

3D diffractive imaging of nanoparticle ensembles using an x-ray laser

Kartik Ayyer et al.

Summary: Single particle imaging at XFELs has the potential to determine the structure and dynamics of single biomolecules at room temperature. By overcoming hurdles in collecting high-quality diffraction patterns and computational purification, researchers have successfully obtained sub-nano meter resolution 3D reconstructions for biomolecular imaging. These advancements in X-ray sources, detectors, sample delivery, and data analysis algorithms illuminate new possibilities for characterizing diverse ensembles at the structural level.

OPTICA (2021)

Article Chemistry, Multidisciplinary

High-Throughput 3D Ensemble Characterization of Individual Core-Shell Nanoparticles with X-ray Free Electron Laser Single-Particle Imaging

Do Hyung Cho et al.

Summary: The study utilizes X-ray free electron lasers and algorithms for multiple-model 3D imaging to investigate thousands of specimens in a short period of time and identify intrinsic heterogeneities with 3D structures. Quantitative analysis reveals various features of the 3D structures, providing quantitative information at the nanoscale.

ACS NANO (2021)

Article Optics

Ptychographic wavefront characterization for single-particle imaging at x-ray lasers

Benedikt J. Daurer et al.

Summary: This study demonstrates high-resolution multiple-plane wavefront imaging of XFEL pulses using mixed-state ptychography, providing insights into experimental sources of instability and emphasizing the importance of local photon fluence correction for SPI experiments. The detailed characterization will aid in interpreting data from past and future SPI experiments, and contribute to further improvements in experimental design and reconstruction algorithms.

OPTICA (2021)

Article Computer Science, Artificial Intelligence

Classification of diffraction patterns in single particle imaging experiments performed at x-ray free-electron lasers using a convolutional neural network

Alexandr Ignatenko et al.

Summary: Single particle imaging (SPI) has shown promising results for native structure determination, with the fast progress of x-ray free-electron lasers. Deep neural networks such as YOLOv2 and YOLOv3 are successfully used for automated data analysis in SPI experiments, with YOLOv2 showing the best performance in classifying diffracted intensity represented by color images.

MACHINE LEARNING-SCIENCE AND TECHNOLOGY (2021)

Article Biochemical Research Methods

Time-resolved serial femtosecond crystallography at the European XFEL

Suraj Pandey et al.

NATURE METHODS (2020)

Article Physics, Multidisciplinary

Megahertz single-particle imaging at the European XFEL

Egor Sobolev et al.

COMMUNICATIONS PHYSICS (2020)

Article Biochemistry & Molecular Biology

Recent results in time resolved serial femtosecond crystallography at XFELs

Allen M. Orville

CURRENT OPINION IN STRUCTURAL BIOLOGY (2020)

Article Instruments & Instrumentation

X-ray optics for advanced ultrafast pump-probe X-ray experiments at SACLA

Tetsuo Katayama et al.

JOURNAL OF SYNCHROTRON RADIATION (2019)

Article Multidisciplinary Sciences

Electrospray sample injection for single-particle imaging with x-ray lasers

Johan Bielecki et al.

SCIENCE ADVANCES (2019)

Article Biochemical Research Methods

Microfluidic sample delivery for serial crystallography using XFELs

Austin Echelmeier et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2019)

Article Chemistry, Multidisciplinary

Plasmonic Photothermal Nanoparticles for Biomedical Applications

Minho Kim et al.

ADVANCED SCIENCE (2019)

Article Optics

Low-signal limit of X-ray single particle diffractive imaging

Kartik Ayyer et al.

OPTICS EXPRESS (2019)

Article Biochemical Research Methods

Sample delivery for serial crystallography at free-electron lasers and synchrotrons

Marie Luise Gruenbein et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2019)

Article Nanoscience & Nanotechnology

Seeded Growth Synthesis of Gold Nanotriangles: Size Control, SAXS Analysis, and SERS Performance

Christian Kuttner et al.

ACS APPLIED MATERIALS & INTERFACES (2018)

Article Multidisciplinary Sciences

Retinal isomerization in bacteriorhodopsin captured by a femtosecond x-ray laser

Przemyslaw Nogly et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

Single-shot 3D coherent diffractive imaging of core-shell nanoparticles with elemental specificity

Alan Pryor et al.

SCIENTIFIC REPORTS (2018)

Review Chemistry, Multidisciplinary

Current Status of Single Particle Imaging with X-ray Lasers

Zhibin Sun et al.

APPLIED SCIENCES-BASEL (2018)

Article Physics, Multidisciplinary

Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses

Ruslan P. Kurta et al.

PHYSICAL REVIEW LETTERS (2017)

Article Instruments & Instrumentation

Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL

Miki Nakano et al.

JOURNAL OF SYNCHROTRON RADIATION (2017)

Article Biochemistry & Molecular Biology

X-ray free electron laser single-particle analysis for biological systems

Osamu Miyashita et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Single molecule imaging using X-ray free electron lasers

Anton Barty

CURRENT OPINION IN STRUCTURAL BIOLOGY (2016)

Article Chemistry, Multidisciplinary

Reverse Size Dependences of the Cellular Uptake of Triangular and Spherical Gold Nanoparticles

Katsuyuki Nambara et al.

LANGMUIR (2016)

Article Biochemical Research Methods

Fixed target combined with spectral mapping: approaching 100% hit rates for serial crystallography

Saeed Oghbaey et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2016)

Article Chemistry, Multidisciplinary

Dragonfly: an implementation of the expand-maximize-compress algorithm for single-particle imaging

Kartik Ayyer et al.

JOURNAL OF APPLIED CRYSTALLOGRAPHY (2016)

Review Chemistry, Multidisciplinary

Gold Nanoparticles for In Vitro Diagnostics

Wen Zhou et al.

CHEMICAL REVIEWS (2015)

Article Physics, Multidisciplinary

Three-Dimensional Reconstruction of the Giant Mimivirus Particle with an X-Ray Free-Electron Laser

Tomas E Ekeberg et al.

PHYSICAL REVIEW LETTERS (2015)

Article Biochemical Research Methods

Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array

Artem Y. Lyubimov et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2015)

Article Instruments & Instrumentation

Sorting algorithms for single-particle imaging experiments at X-ray free-electron lasers

S. A. Bobkov et al.

JOURNAL OF SYNCHROTRON RADIATION (2015)

Article Chemistry, Physical

The linac coherent light source single particle imaging road map

A. Aquila et al.

STRUCTURAL DYNAMICS-US (2015)

Article Biology

High-resolution structure of viruses from random diffraction snapshots

A. Hosseinizadeh et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2014)

Review Biology

A minimal view of single-particle imaging with X-ray lasers

N. Duane Loh

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2014)

Article Instruments & Instrumentation

Development of an X-ray pixel detector with multi-port charge-coupled device for X-ray free-electron laser experiments

Takashi Kameshima et al.

REVIEW OF SCIENTIFIC INSTRUMENTS (2014)

Article Multidisciplinary Sciences

Imaging live cell in micro-liquid enclosure by X-ray laser diffraction

Takashi Kimura et al.

NATURE COMMUNICATIONS (2014)

Article Multidisciplinary Sciences

Fixed-target protein serial microcrystallography with an x-ray free electron laser

Mark S. Hunter et al.

SCIENTIFIC REPORTS (2014)

Article Optics

A compact X-ray free-electron laser emitting in the sub-angstrom region

Tetsuya Ishikawa et al.

NATURE PHOTONICS (2012)

Article Multidisciplinary Sciences

Single mimivirus particles intercepted and imaged with an X-ray laser

M. Marvin Seibert et al.

NATURE (2011)

Article Physics, Multidisciplinary

Femtosecond diffractive imaging with a soft-X-ray free-electron laser

Henry N. Chapman et al.

NATURE PHYSICS (2006)

Article Optics

High-resolution ab initio three-dimensional x-ray diffraction microscopy

HN Chapman et al.

JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION (2006)

Article Multidisciplinary Sciences

Biological imaging by soft x-ray diffraction microscopy

D Shapiro et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Materials Science, Multidisciplinary

X-ray image reconstruction from a diffraction pattern alone

S Marchesini et al.

PHYSICAL REVIEW B (2003)

Article Multidisciplinary Sciences

Potential for biomolecular imaging with femtosecond X-ray pulses

R Neutze et al.

NATURE (2000)