Related references
Note: Only part of the references are listed.Clinical relevance of proteomic profiling in de novo pediatric acute myeloid leukemia: a Children's Oncology Group study
Fieke W. Hoff et al.
HAEMATOLOGICA (2022)
Venetoclax combines synergistically with FLT3 inhibition to effectively target leukemic cells in FLT3-ITD+ acute myeloid leukemia models
Raghuveer Singh Mali et al.
HAEMATOLOGICA (2021)
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma
Chen Huang et al.
CANCER CELL (2021)
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets
Damian Szklarczyk et al.
NUCLEIC ACIDS RESEARCH (2021)
Proteogenomic and metabolomic characterization of human glioblastoma
Liang-Bo Wang et al.
CANCER CELL (2021)
leapR: An R Package for Multiomic Pathway Analysis
Vincent Danna et al.
JOURNAL OF PROTEOME RESEARCH (2021)
Drug ranking using machine learning systematically predicts the efficacy of anti-cancer drugs
Henry Gerdes et al.
NATURE COMMUNICATIONS (2021)
The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance
Sunil K. Joshi et al.
CANCER CELL (2021)
Phosphoproteomic Characterization of Primary AML Samples and Relevance for Response Toward FLT3-inhibitors
David G. J. Cucchi et al.
HEMASPHERE (2021)
Concomitant targeting of BCL2 with venetoclax and MAPK signaling with cobimetinib in acute myeloid leukemia models
Lina Han et al.
HAEMATOLOGICA (2020)
Phenotype-based drug screening reveals association between venetoclax response and differentiation stage in acute myeloid leukemia
Heikki Kuusanmaki et al.
HAEMATOLOGICA (2020)
Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma (vol 179, pg 964, 2019)
David J. Clark et al.
CELL (2020)
Quantitative Proteomics of the Cancer Cell Line Encyclopedia
David P. Nusinow et al.
CELL (2020)
Proteogenomic Characterization of Endometrial Carcinoma
Yongchao Dou et al.
CELL (2020)
Phosphotyrosine-based Phosphoproteomics for Target Identification and Drug Response Prediction in AML Cell Lines
Carolien van Alphen et al.
MOLECULAR & CELLULAR PROTEOMICS (2020)
Leukemia incidence trends at the global, regional, and national level between 1990 and 2017
Ying Dong et al.
EXPERIMENTAL HEMATOLOGY & ONCOLOGY (2020)
Predicting Drug Response and Synergy Using a Deep Learning Model of Human Cancer Cells
Brent M. Kuenzi et al.
CANCER CELL (2020)
Proteome activity landscapes of tumor cell lines determine drug responses
Martin Frejno et al.
NATURE COMMUNICATIONS (2020)
Genomic markers of midostaurin drug sensitivity in FLT3 mutated and FLT3 wild-type acute myeloid leukemia patients
Mara W. Rosenberg et al.
Oncotarget (2020)
Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma
Yingwei Hu et al.
CELL REPORTS (2020)
Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
Karsten Krug et al.
CELL (2020)
Dr.VAE: improving drug response prediction via modeling of drug perturbation effects
Ladislav Rampasek et al.
BIOINFORMATICS (2019)
Predicting response to BET inhibitors using computational modeling: A BEAT AML project study
Leylah M. Drusbosky et al.
LEUKEMIA RESEARCH (2019)
The TP53 Apoptotic Network Is a Primary Mediator of Resistance to BCL2 Inhibition in AML Cells
Tamilla Nechiporuk et al.
CANCER DISCOVERY (2019)
An Integrative Analysis of Tumor Proteomic and Phosphoproteomic Profiles to Examine the Relationships Between Kinase Activity and Phosphorylation
Osama A. Arshad et al.
MOLECULAR & CELLULAR PROTEOMICS (2019)
15 years of PhosphoSitePlus®: integrating post-translationally modified sites, disease variants and isoforms
Peter V. Hornbeck et al.
NUCLEIC ACIDS RESEARCH (2019)
The cancer cell proteome and transcriptome predicts sensitivity to targeted and cytotoxic drugs
Mattias Rydenfelt et al.
LIFE SCIENCE ALLIANCE (2019)
Nuclear accumulation of SHIP1 mutants derived from AML patients leads to increased proliferation of leukemic cells
Marcus M. Nalaskowski et al.
CELLULAR SIGNALLING (2018)
Proteomic and genomic integration identifies kinase and differentiation determinants of kinase inhibitor sensitivity in leukemia cells
Pedro Casado et al.
LEUKEMIA (2018)
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry
Philipp Mertins et al.
NATURE PROTOCOLS (2018)
Dual inhibition of JAK1/2 kinases and BCL2: a promising therapeutic strategy for acute myeloid leukemia
Stephen E. Kurtz et al.
LEUKEMIA (2018)
Genetic and transcriptional evolution alters cancer cell line drug response
Uri Ben-David et al.
NATURE (2018)
Functional genomic landscape of acute myeloid leukaemia
Jeffrey W. Tyner et al.
NATURE (2018)
Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach
Mehreen Ali et al.
BIOINFORMATICS (2018)
Proteome Profiling Outperforms Transcriptome Profiling for Coexpression Based Gene Function Prediction
Jing Wang et al.
MOLECULAR & CELLULAR PROTEOMICS (2017)
Molecularly targeted drug combinations demonstrate selective effectiveness for myeloid- and lymphoidderived hematologic malignancies
Stephen E. Kurtz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
PCSF: An R-package for network-based interpretation of high-throughput data
Murodzhon Akhmedov et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
FGF2 from Marrow Microenvironment Promotes Resistance to FLT3 Inhibitors in Acute Myeloid Leukemia
Elie Traer et al.
CANCER RESEARCH (2016)
A Landscape of Pharmacogenomic Interactions in Cancer
Francesco Iorio et al.
CELL (2016)
Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package
Nurcan Tuncbag et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Correcting systematic bias and instrument measurement drift with mzRefinery
Bryson C. Gibbons et al.
BIOINFORMATICS (2015)
Dose-dependent role of the cohesin complex in normal and malignant hematopoiesis
Aaron D. Viny et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2015)
High-throughput screening using patient-derived tumor xenografts to predict clinical trial drug response
Hui Gao et al.
NATURE MEDICINE (2015)
Harnessing Connectivity in a Large-Scale Small-Molecule Sensitivity Dataset
Brinton Seashore-Ludlow et al.
CANCER DISCOVERY (2015)
A community effort to assess and improve drug sensitivity prediction algorithms
James C. Costello et al.
NATURE BIOTECHNOLOGY (2014)
MS-GF plus makes progress towards a universal database search tool for proteomics
Sangtae Kim et al.
NATURE COMMUNICATIONS (2014)
Proteochemometric modeling in a Bayesian framework
Isidro Cortes-Ciriano et al.
JOURNAL OF CHEMINFORMATICS (2014)
Pharmacogenomics in clinical practice and drug development
Andrew R. Harper et al.
NATURE BIOTECHNOLOGY (2012)
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)
Survey of Activated FLT3 Signaling in Leukemia
Ting-lei Gu et al.
PLOS ONE (2011)
A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
Richard M. Myers et al.
PLOS BIOLOGY (2011)
Regularization Paths for Generalized Linear Models via Coordinate Descent
Jerome Friedman et al.
JOURNAL OF STATISTICAL SOFTWARE (2010)
MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features
Matthew E. Monroe et al.
COMPUTATIONAL BIOLOGY AND CHEMISTRY (2008)
Spectral probabilities and generating functions of tandem mass spectra: A strike against decoy databases
Sangtae Kim et al.
JOURNAL OF PROTEOME RESEARCH (2008)
NetworKIN: a resource for exploring cellular phosphorylation networks
Rune Linding et al.
NUCLEIC ACIDS RESEARCH (2008)
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
Sean A. Beausoleil et al.
NATURE BIOTECHNOLOGY (2006)
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
S Maere et al.
BIOINFORMATICS (2005)
Regularization and variable selection via the elastic net
H Zou et al.
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2005)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)