4.7 Article

Integrative Analysis of the Transcriptome and Metabolome Reveals Genes Involved in Phenylpropanoid and Flavonoid Biosynthesis in the Trapa bispinosa Roxb.

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

Genome sequencing and transcriptome analyses provide insights into the origin and domestication of water caltrop (Trapa spp., Lythraceae)

Rui-Sen Lu et al.

Summary: The study reveals the domestication history of water caltrop, indicating that it was likely first domesticated in the Yangtze River Valley in China and went through an allopolyploid origin process within the past 230,000-310,000 years. The research also identified key genes through selective sweep and transcriptome profiling analyses during the domestication of water caltrop, which may contribute to larger fruit sizes and a more vigorous root system.

PLANT BIOTECHNOLOGY JOURNAL (2022)

Review Biochemistry & Molecular Biology

Contribution of phenylpropanoid metabolism to plant development and plant-environment interactions

Nai-Qian Dong et al.

Summary: Phenylpropanoid metabolism is crucial for plant development and interaction with the environment. Plants have evolved multiple branches of this pathway, generating a variety of metabolites. Various factors regulate phenylpropanoid metabolism to maintain homeostasis during plant development and in response to environmental stresses.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2021)

Article Plant Sciences

Maize metabolome and proteome responses to controlled cold stress partly mimic early-sowing effects in the field and differ from those of Arabidopsis

Maria Urrutia et al.

Summary: Research in Northern Europe suggests that planting maize one month earlier than usual may result in moderate chilling damage, with limited studies on metabolic responses to low temperatures. By analyzing genetically diverse maize hybrids under varying temperature conditions, it was found that certain metabolites and proteins exhibit consistent changes across different temperature fluctuations, providing potential insights for breeding purposes.

PLANT CELL AND ENVIRONMENT (2021)

Article Plant Sciences

Transcriptome and metabolome analyses revealed the response mechanism of apple to different phosphorus stresses

Tingting Sun et al.

Summary: The study compared physiological, transcriptome, and metabolite analyses of apple leaves and roots under different phosphorus conditions, revealing that different P stresses influenced phenotypic characteristics and the contents of various substances in apple seedlings. RNA sequencing showed the impact of P stresses on apple seedlings' gene expression.

PLANT PHYSIOLOGY AND BIOCHEMISTRY (2021)

Article Multidisciplinary Sciences

Integration of transcriptome and targeted metabolome profiling reveals hormone related genes involved in the growth of Bletilla striata

Hengwei Zou et al.

Summary: The study found that the Aspergillus flavus elicitor 1-G4 can promote the growth and development of Bletilla striata, increasing the contents of SA, ICAld, and ME-IAA while decreasing IP and ACC contents. By analyzing transcriptomics and metabolomics, key genes involved in B. striata growth were identified, laying a foundation for the effective utilization of endophytic fungi and the optimization of B. striata germplasm resources.

SCIENTIFIC REPORTS (2021)

Article Biochemistry & Molecular Biology

A R2R3-MYB transcriptional activator LmMYB15 regulates chlorogenic acid biosynthesis and phenylpropanoid metabolism in Lonicera macranthoides

Ning Tang et al.

Summary: The R2R3 MYB transcription factor LmMYB15 may play a role in the biosynthesis of chlorogenic acid (CGA) in Lonicera macranthoides, by activating genes like 4CL, MYB3, and MYB4 to increase CGA content. The findings provide a new approach for breeding strategies aiming to enhance CGA content in L. macranthoides, which can significantly improve its mechanical properties.

PLANT SCIENCE (2021)

Article Agriculture, Multidisciplinary

Integration of the metabolome and transcriptome reveals the metabolites and genes related to nutritional and medicinal value in Coriandrum sativum

Wu Tong et al.

Summary: Coriander, a culinary herb with medicinal effects, was found to have metabolic pathways related to early development, producing various bioactive compounds. By identifying these pathways and associated genes, as well as discovering nutritionally and medicinally relevant metabolites, further research on the roles of these metabolites in medicinal and nutritional aspects is encouraged.

JOURNAL OF INTEGRATIVE AGRICULTURE (2021)

Article Biotechnology & Applied Microbiology

Tissue-specific transcriptome for Dendrobium officinale reveals genes involved in flavonoid biosynthesis

Yingdan Yuan et al.

GENOMICS (2020)

Article Immunology

Anti-virulence activity of polyphenolic fraction isolated from Kombucha against Vibrio cholerae

Debanjana Bhattacharya et al.

MICROBIAL PATHOGENESIS (2020)

Article Biotechnology & Applied Microbiology

Microbial diversity and composition of the Preah Vihear temple in Cambodia by high-throughput sequencing based on genomic DNA and RNA

Han Meng et al.

INTERNATIONAL BIODETERIORATION & BIODEGRADATION (2020)

Review Food Science & Technology

Antioxidant Potential Overviews of Secondary Metabolites (Polyphenols) in Fruits

Mohammed Sharif Swallah et al.

INTERNATIONAL JOURNAL OF FOOD SCIENCE (2020)

Review Agriculture, Dairy & Animal Science

Antioxidant mechanism of tea polyphenols and its impact on health benefits

Zhaoming Yan et al.

ANIMAL NUTRITION (2020)

Review Chemistry, Multidisciplinary

High-Throughput Metabolomics by 1D NMR

Alessia Vignoli et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2019)

Review Genetics & Heredity

RNA sequencing: the teenage years

Rory Stark et al.

NATURE REVIEWS GENETICS (2019)

Review Food Science & Technology

Phenolic compounds as natural and multifunctional anti-obesity agents: A review

Celia Rodriguez-Perez et al.

CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION (2019)

Article Plant Sciences

Apple bZIP transcription factor MdbZIP44 regulates abscisic acid-promoted anthocyanin accumulation

Jian-Ping An et al.

PLANT CELL AND ENVIRONMENT (2018)

Review Biochemistry & Molecular Biology

Frontiers of high-throughput metabolomics

Mattia Zampieri et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2017)

Review Food Science & Technology

Chemical composition, health effects, and uses of water caltrop

Fan Zhu

TRENDS IN FOOD SCIENCE & TECHNOLOGY (2016)

Article Chemistry, Analytical

Multiscale peak detection in wavelet space

Zhi-Min Zhang et al.

ANALYST (2015)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Review Pharmacology & Pharmacy

Trapa bispinosa Roxb.: A Review on Nutritional and Pharmacological Aspects

Prafulla Adkar et al.

ADVANCES IN PHARMACOLOGICAL SCIENCES (2014)

Article Chemistry, Analytical

SIMULTANEOUS DETERMINATION OF PHENOLIC ACIDS IN WATER CALTROP BY HPLC-DAD

Iuliana Stoicescu et al.

ANALYTICAL LETTERS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li et al.

BMC BIOINFORMATICS (2011)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)