Related references
Note: Only part of the references are listed.Genomic structure predicts metabolite dynamics in microbial communities
Karna Gowda et al.
CELL (2022)
Microfluidic chips provide visual access to in situ soil ecology
Paola Micaela Mafla-Endara et al.
COMMUNICATIONS BIOLOGY (2021)
Substrate spatial heterogeneity reduces soil microbial activity
Andong Shi et al.
SOIL BIOLOGY & BIOCHEMISTRY (2021)
Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding
Camila Duarte Ritter et al.
MICROBIAL ECOLOGY (2021)
Multi-kingdom ecological drivers of microbiota assembly in preterm infants
Chitong Rao et al.
NATURE (2021)
Methods for Studying Bacterial-Fungal Interactions in the Microenvironments of Soil
Edoardo Mandolini et al.
APPLIED SCIENCES-BASEL (2021)
Open challenges for microbial network construction and analysis
Karoline Faust
ISME JOURNAL (2021)
Fungi participate in the dysbiosis of gut microbiota in patients with primary sclerosing cholangitis
Sara Lemoinne et al.
GUT (2020)
Volatile-mediated antagonism of soil bacterial communities against fungi
Xiaogang Li et al.
ENVIRONMENTAL MICROBIOLOGY (2020)
Domestication of Oryza species eco-evolutionarily shapes bacterial and fungal communities in rice seed
Hyun Kim et al.
MICROBIOME (2020)
Vulnerability and resistance in the spatial heterogeneity of soil microbial communities under resource additions
Kelly Gravuer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
A fungal pathogen induces systemic susceptibility and systemic shifts in wheat metabolome and microbiome composition
Heike Seybold et al.
NATURE COMMUNICATIONS (2020)
The gut mycobiome: The overlooked constituent of clinical outcomes and treatment complications in patients with cancer and other immunosuppressive conditions
Jessica R. Galloway-Peña et al.
PLoS Pathogens (2020)
Beyond Just Bacteria: Functional Biomes in the Gut Ecosystem Including Virome, Mycobiome, Archaeome and Helminths
Ravichandra Vemuri et al.
MICROORGANISMS (2020)
Contribution of Microbial Inter-kingdom Balance to Plant Health
Chunlei Zhang et al.
MOLECULAR PLANT (2019)
Nestedness in complex networks: Observation, emergence, and implications
Manuel Sebastian Mariani et al.
PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS (2019)
Difficulty in inferring microbial community structure based on co-occurrence network approaches
Hokuto Hirano et al.
BMC BIOINFORMATICS (2019)
Co-occurrence patterns between bacterial and fungal communities in response to a vegetation gradient in a freshwater wetland
Minghua Chen et al.
CANADIAN JOURNAL OF MICROBIOLOGY (2019)
Causes and consequences of biotic interactions within microbiomes
Casey M. Cosetta et al.
CURRENT OPINION IN MICROBIOLOGY (2019)
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
Victor J. Carrion et al.
SCIENCE (2019)
Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome
Joy Bergelson et al.
SCIENTIFIC REPORTS (2019)
A Fungal World: Could the Gut Mycobiome Be Involved in Neurological Disease?
Jessica D. Forbes et al.
FRONTIERS IN MICROBIOLOGY (2019)
Disease-induced assemblage of a plant-beneficial bacterial consortium
Roeland L. Berendsen et al.
ISME JOURNAL (2018)
Species coexistence through simultaneous fluctuation-dependent mechanisms
Andrew D. Letten et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Responses of fungal-bacterial community and network to organic inputs vary among different spatial habitats in soil
Wei Zheng et al.
SOIL BIOLOGY & BIOCHEMISTRY (2018)
Cooperative interactions between seed-borne bacterial and air-borne fungal pathogens on rice
Boknam Jung et al.
NATURE COMMUNICATIONS (2018)
Horizontal Gene Transfer From Bacteria and Plants to the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis
Meng Li et al.
FRONTIERS IN PLANT SCIENCE (2018)
Fungi stabilize connectivity in the lung and skin microbial ecosystems
Laura Tipton et al.
MICROBIOME (2018)
Signatures of ecological processes in microbial community time series
Karoline Faust et al.
MICROBIOME (2018)
Microbial Eukaryotes: a Missing Link in Gut Microbiome Studies
Isabelle Laforest-Lapointe et al.
MSYSTEMS (2018)
Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival
Paloma Duran et al.
CELL (2018)
Integrated proteomics and metabolomics suggests symbiotic metabolism and multimodal regulation in a fungal-endobacterial system
Zhou Li et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens
J. Uehling et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Fungus-associated bacteriome in charge of their host behavior
Kristin Schulz-Bohm et al.
FUNGAL GENETICS AND BIOLOGY (2017)
Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi
Stephen J. Mondo et al.
NATURE COMMUNICATIONS (2017)
A prophage tail-like protein is deployed by Burkholderia bacteria to feed on fungi
Durga Madhab Swain et al.
NATURE COMMUNICATIONS (2017)
The gut mycobiome of the Human Microbiome Project healthy cohort
Andrea K. Nash et al.
MICROBIOME (2017)
Fungal networks serve as novel ecological routes for enrichment and dissemination of antibiotic resistance genes as exhibited by microcosm experiments
Rashid Nazir et al.
SCIENTIFIC REPORTS (2017)
Commensal Fungi Recapitulate the Protective Benefits of Intestinal Bacteria
Tony T. Jiang et al.
CELL HOST & MICROBE (2017)
Host-microbe interactions: commensal fungi in the gut
Marissa J. Paterson et al.
CURRENT OPINION IN MICROBIOLOGY (2017)
A Generalist Protist Predator Enables Coexistence in Multitrophic Predator-Prey Systems Containing a Phage and the Bacterial Predator Bdellovibrio
Julia Johnke et al.
FRONTIERS IN ECOLOGY AND EVOLUTION (2017)
Symbiosis with an endobacterium increases the fitness of a mycorrhizal fungus, raising its bioenergetic potential
Alessandra Salvioli et al.
ISME JOURNAL (2016)
Molecular mechanisms underlying the close association between soil Burkholderia and fungi
Nejc Stopnisek et al.
ISME JOURNAL (2016)
A widespread plant-fungal-bacterial symbiosis promotes plant biodiversity, plant nutrition and seedling recruitment
Marcel G. A. van der Heijden et al.
ISME JOURNAL (2016)
Mycelium-Like Networks Increase Bacterial Dispersal, Growth, and Biodegradation in a Model Ecosystem at Various Water Potentials
Anja Worrich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Systemic enrichment of antifungal traits in the rhizosphere microbiome after pathogen attack
Jan-Hendrik Dudenhoeffer et al.
JOURNAL OF ECOLOGY (2016)
Agar composition affects in vitro screening of biocontrol activity of antagonistic microorganisms
L. Bosmans et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2016)
An interdomain network: the endobacterium of a mycorrhizal fungus promotes antioxidative responses in both fungal and plant hosts
Candida Vannini et al.
NEW PHYTOLOGIST (2016)
Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria
Olga A. Lastovetsky et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
The sapro-rhizosphere: Carbon flow from saprotrophic fungi into fungus-feeding bacteria
Max-Bernhard Ballhausen et al.
SOIL BIOLOGY & BIOCHEMISTRY (2016)
Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil
Samiran Banerjee et al.
SOIL BIOLOGY & BIOCHEMISTRY (2016)
Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation
Matthew T. Agler et al.
PLOS BIOLOGY (2016)
MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses
Vanni Bucci et al.
GENOME BIOLOGY (2016)
The Role of the Microbiome of Truffles in Aroma Formation: a Meta-Analysis Approach
Maryam Vahdatzadeh et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Identification of horizontally transferred genes in the genus Colletotrichum reveals a steady tempo of bacterial to fungal gene transfer
Vinicio D. Armijos Jaramillo et al.
BMC GENOMICS (2015)
Revisiting the hypothesis that fungal-to-bacterial dominance characterizes turnover of soil organic matter and nutrients
Johannes Rousk et al.
ECOLOGICAL MONOGRAPHS (2015)
Oxalic acid: a signal molecule for fungus-feeding bacteria of the genus Collimonas?
M. B. Rudnick et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2015)
Microbiomes: unifying animal and plant systems through the lens of community ecology theory
Natalie Christian et al.
FRONTIERS IN MICROBIOLOGY (2015)
Methods for Baiting and Enriching Fungus-Feeding (Mycophagous) Rhizosphere Bacteria
Max-Bernhard Ballhausen et al.
FRONTIERS IN MICROBIOLOGY (2015)
Identifying Keystone Species in the Human Gut Microbiome from Metagenomic Timeseries Using Sparse Linear Regression
Charles K. Fisher et al.
PLOS ONE (2014)
Evolutionary limits to cooperation in microbial communities
Nuno M. Oliveira et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Frequent, independent transfers of a catabolic gene from bacteria to contrasted filamentous eukaryotes
Maxime Bruto et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2014)
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
David Berry et al.
FRONTIERS IN MICROBIOLOGY (2014)
Bacterial farming by the fungus Morchella crassipes
Martin Pion et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota
Richard R. Stein et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Stability criteria for complex ecosystems
Stefano Allesina et al.
NATURE (2012)
Diversity, stability and resilience of the human gut microbiota
Catherine A. Lozupone et al.
NATURE (2012)
The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss
J. Jeffrey Morris et al.
MBIO (2012)
What traits are carried on mobile genetic elements, and why?
D. J. Rankin et al.
HEREDITY (2011)
Horizontal Gene Transfer of the Secretome Drives the Evolution of Bacterial Cooperation and Virulence
Teresa Nogueira et al.
CURRENT BIOLOGY (2009)
Universal and species-specific bacterial 'fungiphiles' in the mycospheres of different basidiomycetous fungi
J. A. Warmink et al.
ENVIRONMENTAL MICROBIOLOGY (2009)
Mycophagous growth of Collimonas bacteria in natural soils, impact on fungal biomass turnover and interactions with mycophagous Trichoderma fungi
Sachie Hoppener-Ogawa et al.
ISME JOURNAL (2009)
The evolution of facilitation and mutualism
Judith L. Bronstein
JOURNAL OF ECOLOGY (2009)
Fungal endophytes: diversity and functional roles
R. J. Rodriguez et al.
NEW PHYTOLOGIST (2009)
Modularity and community structure in networks
M. E. J. Newman
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Pathogenic fungus harbours endosymbiotic bacteria for toxin production
LP Partida-Martinez et al.
NATURE (2005)
Taking the fungal highway: Mobilization of pollutant-degrading bacteria by fungi
S Kohlmeier et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2005)
Food-web structure and network theory: The role of connectance and size
JA Dunne et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)