Related references
Note: Only part of the references are listed.Glycomedicine: The Current State of the Art
Wei Wang
ENGINEERING (2023)
Using integrated meta-omics to appreciate the role of the gut microbiota in epilepsy
Lucia Boeri et al.
NEUROBIOLOGY OF DISEASE (2022)
Editorial: Computational Predictions, Dynamic Tracking, and Evolutionary Analysis of Antibiotic Resistance Through the Mining of Microbial Genomes and Metagenomic Data
Liang Wang et al.
FRONTIERS IN MICROBIOLOGY (2022)
Urethral Microbiota in Men: Association of Haemophilus influenzae and Mycoplasma penetrans With Nongonococcal Urethritis
Sujatha Srinivasan et al.
CLINICAL INFECTIOUS DISEASES (2021)
Metatranscriptomic assessment of burn wound infection clearance
Teija Ojala et al.
CLINICAL MICROBIOLOGY AND INFECTION (2021)
The microbiota in pneumonia: From protection to predisposition
Charlotte Thibeault et al.
SCIENCE TRANSLATIONAL MEDICINE (2021)
Understanding the host-microbe interactions using metabolic modeling
Jack Jansma et al.
MICROBIOME (2021)
Metagenomic Approaches to Analyze Antimicrobial Resistance: An Overview
Vinicius A. C. de Abreu et al.
FRONTIERS IN GENETICS (2021)
Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota
Francesco Durazzi et al.
SCIENTIFIC REPORTS (2021)
The multidimensional nature of metagenomics drives interdisciplinary diagnostics
Jutte J. C. de Vries
EBIOMEDICINE (2021)
The salivary metatranscriptome as an accurate diagnostic indicator of oral cancer
Guruduth Banavar et al.
NPJ GENOMIC MEDICINE (2021)
Cerebrospinal Fluid from Healthy Pregnant Women Does Not Harbor a Detectable Microbial Community
Yongyong Kang et al.
MICROBIOLOGY SPECTRUM (2021)
Urinary Microbiome: Yin and Yang of the Urinary Tract
Virginia Perez-Carrasco et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2021)
The Female Vaginal Microbiome in Health and Bacterial Vaginosis
Xiaodi Chen et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2021)
Genome-Scale Metabolic Modeling of the Human Microbiome in the Era of Personalized Medicine
Almut Heinken et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 75, 2021 (2021)
A machine learning framework that integrates multi-omics data predicts cancer-related LncRNAs
Lin Yuan et al.
BMC BIOINFORMATICS (2021)
A metabolomics pipeline for the mechanistic interrogation of the gut microbiome
Shuo Han et al.
NATURE (2021)
The Relationship Between the Gut Microbiome and Neurodegenerative Diseases
Xueling Zhu et al.
NEUROSCIENCE BULLETIN (2021)
'Gut health' and the microbiome in the popular press: a content analysis
Alessandro R. Marcon et al.
BMJ OPEN (2021)
Applications of Raman Spectroscopy in Bacterial Infections: Principles, Advantages, and Shortcomings
Liang Wang et al.
FRONTIERS IN MICROBIOLOGY (2021)
Metatranscriptomic Analysis of Human Lung Metagenomes from Patients with Lung Cancer
Ya-Sian Chang et al.
GENES (2021)
Comparative Analysis of 16S rRNA Gene and Metagenome Sequencing in Pediatric Gut Microbiomes
Danielle Peterson et al.
FRONTIERS IN MICROBIOLOGY (2021)
Gut microbiome and its meta-omics perspectives: profound implications for cardiovascular diseases
Jing Xu et al.
GUT MICROBES (2021)
From the Pipeline to the Bedside: Advances and Challenges in Clinical Metagenomics
Augusto Dulanto Chiang et al.
JOURNAL OF INFECTIOUS DISEASES (2020)
Blood Microbiota and Circulating Microbial Metabolites in Diabetes and Cardiovascular Disease
Ganesan Velmurugan et al.
TRENDS IN ENDOCRINOLOGY AND METABOLISM (2020)
The Human Oral Microbiome in Health and Disease: From Sequences to Ecosystems
Jesse R. Willis et al.
MICROORGANISMS (2020)
GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms
Patrick Denis Browne et al.
GIGASCIENCE (2020)
Metaproteomics characterizes human gut microbiome function in colorectal cancer
Shuping Long et al.
NPJ BIOFILMS AND MICROBIOMES (2020)
Metabolome-Microbiome Crosstalk and Human Disease
Kathleen A. Lee-Sarwar et al.
METABOLITES (2020)
The role of the microbiota in periodontal disease
Mike A. Curtis et al.
PERIODONTOLOGY 2000 (2020)
Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research
Lasse Nyholm et al.
ISCIENCE (2020)
Stomach microbiota,Helicobacter pylori, and group 2 innate lymphoid cells
Hiroshi Ohno et al.
EXPERIMENTAL AND MOLECULAR MEDICINE (2020)
Database limitations for studying the human gut microbiome
Camila K. Dias et al.
PEERJ COMPUTER SCIENCE (2020)
The Microbiota of the Human Mammary Ecosystem
Leonides Fernandez et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2020)
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
I-Min A. Chen et al.
NUCLEIC ACIDS RESEARCH (2019)
Metagenomic and metatranscriptomic analysis of human prostate microbiota from patients with prostate cancer
Ye Feng et al.
BMC GENOMICS (2019)
A new genomic blueprint of the human gut microbiota
Alexandre Almeida et al.
NATURE (2019)
Clinical metagenomics
Charles Y. Chiu et al.
NATURE REVIEWS GENETICS (2019)
Porphyromonas gingivalis in Alzheimer's disease brains: Evidence for disease causation and treatment with small-molecule inhibitors
Stephen S. Dominy et al.
SCIENCE ADVANCES (2019)
Bridging the Holistic-Reductionist Divide in Microbial Ecology
Robin Tecon et al.
MSYSTEMS (2019)
A Robust and Universal Metaproteomics Workflow for Research Studies and Routine Diagnostics Within 24 h Using Phenol Extraction, FASP Digest, and the MetaProteomeAnalyzer
Robert Heyer et al.
FRONTIERS IN MICROBIOLOGY (2019)
Metabolomics Study of Metabolic Changes in Renal Cells in Response to High-Glucose Exposure Based on Liquid or Gas Chromatography Coupled With Mass Spectrometry
Liang Wang et al.
FRONTIERS IN PHARMACOLOGY (2019)
Advances and Challenges in Metatranscriptomic Analysis
Migun Shakya et al.
FRONTIERS IN GENETICS (2019)
Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naive type 2 diabetics
Huanzi Zhong et al.
EBIOMEDICINE (2019)
Metagenomics: aid to combat antimicrobial resistance in diarrhea
Rituparna De
GUT PATHOGENS (2019)
The gut microbiome: Relationships with disease and opportunities for therapy
Juliana Durack et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2019)
Best practices for analysing microbiomes
Rob Knight et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Metatranscriptome of human faecal microbial communities in a cohort of adult men
Galeb S. Abu-Ali et al.
NATURE MICROBIOLOGY (2018)
On the Road to Strain-Resolved Comparative Metagenomics
Nicola Segata
MSYSTEMS (2018)
The Human Gut Microbiome - A Potential Controller of Wellness and Disease
Zhi Y. Kho et al.
FRONTIERS IN MICROBIOLOGY (2018)
Paradigms of Lung Microbiota Functions in Health and Disease, Particularly, in Asthma
Elliot Mathieu et al.
FRONTIERS IN PHYSIOLOGY (2018)
Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection
Wei Gu et al.
Annual Review of Pathology-Mechanisms of Disease (2018)
Pathogen-based precision medicine for drug-resistant tuberculosis
Matthias I. Groeschel et al.
PLOS PATHOGENS (2018)
Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome
Ilaria Laudadio et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2018)
Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing
K. Schmidt et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2017)
The microbiome in respiratory medicine: current challenges and future perspectives
Rosa Faner et al.
EUROPEAN RESPIRATORY JOURNAL (2017)
Shotgun metagenomics, from sampling to analysis
Christopher Quince et al.
NATURE BIOTECHNOLOGY (2017)
The Human Microbiota in Health and Disease
Baohong Wang et al.
ENGINEERING (2017)
MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics
Peng Zhai et al.
BMC BIOINFORMATICS (2017)
Towards biome-specific analysis of meta-omics data
Youssef Darzi et al.
ISME JOURNAL (2016)
The Human Microbiome during Bacterial Vaginosis
Andrew B. Onderdonk et al.
CLINICAL MICROBIOLOGY REVIEWS (2016)
Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome Analysis
Vanessa Aguiar-Pulido et al.
EVOLUTIONARY BIOINFORMATICS (2016)
The challenge of metaproteomic analysis in human samples
Jonathan M. Blackburn et al.
EXPERT REVIEW OF PROTEOMICS (2016)
Meta-omics in Inflammatory Bowel Disease Research: Applications, Challenges, and Guidelines
Mireia Valles-Colomer et al.
JOURNAL OF CROHNS & COLITIS (2016)
Mass spectral databases for LC/MS- and GC/MS-based metabolomics: State of the field and future prospects
Maria Vinaixa et al.
TRAC-TRENDS IN ANALYTICAL CHEMISTRY (2016)
Use of Metatranscriptomics in Microbiome Research
Stavros Bashiardes et al.
BIOINFORMATICS AND BIOLOGY INSIGHTS (2016)
A Metaproteomics Approach to Elucidate Host and Pathogen Protein Expression during Catheter-Associated Urinary Tract Infections (CAUTIs)
Christian Lassek et al.
MOLECULAR & CELLULAR PROTEOMICS (2015)
Meningitis in adolescents: the role of commensal microbiota
James W. B. Moir
TRENDS IN MICROBIOLOGY (2015)
Metagenomics: A new horizon in cancer research
Joyita Banerjee et al.
META GENE (2015)
Distinct signatures of host-microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet
Alesia Walker et al.
ISME JOURNAL (2014)
Relating the metatranscriptome and metagenome of the human gut
Eric A. Franzosa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
The importance of the viable but non-culturable state in human bacterial pathogens
Laam Li et al.
FRONTIERS IN MICROBIOLOGY (2014)
Computational meta'omics for microbial community studies
Nicola Segata et al.
MOLECULAR SYSTEMS BIOLOGY (2013)
Evaluation of Normalization Methods to Pave the Way Towards Large-Scale LC-MS-Based Metabolomics Profiling Experiments
Bedilu Alamirie Ejigu et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2013)
The Potential of Metatranscriptomics for Identifying Screening Targets for Bacterial Vaginosis
Jimmy Twin et al.
PLOS ONE (2013)
Metagenomics for pathogen detection in public health
Ruth R. Miller et al.
GENOME MEDICINE (2013)
The oral microbiome in health and disease and the potential impact on personalized dental medicine
M. F. Zarco et al.
ORAL DISEASES (2012)
Reductionistic and Holistic Science
Ferric C. Fang et al.
INFECTION AND IMMUNITY (2011)
Metabolomics Reveals Metabolic Biomarkers of Crohn's Disease
Janet Jansson et al.
PLOS ONE (2009)