4.6 Article

Comprehensive Genetic Analysis of Monokaryon and Dikaryon Populations Provides Insight Into Cross-Breeding of Flammulina filiformis

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes

Jingcheng Zhang et al.

Summary: This study analyzed the population structure and demographic history of 133 Lentinula edodes strains, uncovered the genetic basis of adaptive evolution, and determined the involvement of genes related to fruiting body development in adaptive evolution.

JOURNAL OF ADVANCED RESEARCH (2022)

Article Biology

Twelve years of SAMtools and BCFtools

Petr Danecek et al.

Summary: SAMtools and BCFtools are widely used tools for processing high-throughput sequencing data, with a history of 12 years of continuous development and improvement. These packages have been utilized in various software projects and genomic pipelines and are freely available on GitHub.

GIGASCIENCE (2021)

Article Biotechnology & Applied Microbiology

Nutritional analysis and molecular characterization of hybrid mushrooms developed through intergeneric protoplast fusion between Pleurotus sajor-caju and Calocybe indica with the purpose to achieve improved strains

Piu Das et al.

Summary: In this study, six somatic hybrid lines were developed through protoplast fusion technique using Calocybe indica and Pleurotus sajor-caju as parent strains. The phenotypic resemblance of fruit bodies with Pleurotus sajor-caju confirmed the hybridity of the newly developed somatic hybrid strains. ISSR profiling and genetic distance analysis revealed recombination in the hybrid genomes, indicating a definite improvement in nutritional properties and biological activity.

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY (2021)

Article Microbiology

Development of CAPS Markers for Evaluation of Genetic Diversity and Population Structure in the Germplasm of Button Mushroom (Agaricus bisporus)

Hyejin An et al.

Summary: A study developed CAPs markers for Agaricus bisporus for diversity, multivariate, and population structure analyses. Analysis revealed a high transition-to-transversion ratio in the SNPs of the markers, with high levels of genetic diversity and gene diversity.

JOURNAL OF FUNGI (2021)

Article Genetics & Heredity

The transcription factor FvHmg1 negatively regulates fruiting body development in Winter Mushroom Flammulina velutipes

Li Meng et al.

Summary: In fruiting body development of Winter Mushroom, FvHmg1 acts as a negative transcription regulator controlled by mating type pathways and transcription factors. When two monokaryons with compatible matA and matB genes cross, FvHmg1 is suppressed, allowing normal full fruiting body development. The relationship between FvHmg1 and mating type pathways contributes to understanding sexual reproduction and fruiting body development in edible mushrooms.
Article Biochemical Research Methods

Minimap2: pairwise alignment for nucleotide sequences

Heng Li

BIOINFORMATICS (2018)

Article Biochemical Research Methods

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen et al.

BIOINFORMATICS (2018)

Article Microbiology

Draft Genome Sequence of the Basidiomycetous Fungus Flammulina velutipes TR19

Atsushi Kurata et al.

GENOME ANNOUNCEMENTS (2016)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Microbiology

A reason for overlap peaks in direct sequencing of rRNA gene ITS in Pleurotus nebrodensis

Chenyang Huang et al.

FEMS MICROBIOLOGY LETTERS (2009)

Article Biochemistry & Molecular Biology

Fast model-based estimation of ancestry in unrelated individuals

David H. Alexander et al.

GENOME RESEARCH (2009)

Article Genetics & Heredity

PLINK: A tool set for whole-genome association and population-based linkage analyses

Shaun Purcell et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2007)