Related references
Note: Only part of the references are listed.The gut microbiome in neurological disorders
John F. Cryan et al.
LANCET NEUROLOGY (2020)
PICRUSt2 for prediction of metagenome functions
Gavin M. Douglas et al.
NATURE BIOTECHNOLOGY (2020)
Microbiome, Parkinson's Disease and Molecular Mimicry
Fabiana Miraglia et al.
CELLS (2019)
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
Jason Lloyd-Price et al.
NATURE (2019)
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
Andrew Maltez Thomas et al.
NATURE MEDICINE (2019)
Identifying Gut Microbiota Associated With Colorectal Cancer Using a Zero-Inflated Lognormal Model
Dongmei Ai et al.
FRONTIERS IN MICROBIOLOGY (2019)
Ruminococcus gnavus, a member of the human gut microbiome associated with Crohn's disease, produces an inflammatory polysaccharide
Matthew T. Henke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
The Crohn's disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response
Sydney Lavoie et al.
ELIFE (2019)
Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease
Floris Imhann et al.
GUT (2018)
Changes in Disease Behaviour and Location in Patients With Crohn's Disease After Seven Years of Follow-Up: A Danish Population-based Inception Cohort
B. Lo et al.
JOURNAL OF CROHNS & COLITIS (2018)
Current understanding of the human microbiome
Jack A. Gilbert et al.
NATURE MEDICINE (2018)
Genome-centric view of carbon processing in thawing permafrost
Ben J. Woodcroft et al.
NATURE (2018)
Enterotype Variations of the Healthy Human Gut Microbiome in Different Geographical Regions
Fauzul Mobeen et al.
BIOINFORMATION (2018)
A microbial signature for Crohn's disease
Victoria Pascal et al.
GUT (2017)
Microbiome Datasets Are Compositional: And This Is Not Optional
Gregory B. Gloor et al.
FRONTIERS IN MICROBIOLOGY (2017)
Dynamics of the human gut microbiome in inflammatory bowel disease
Jonas Halfvarson et al.
NATURE MICROBIOLOGY (2017)
Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes
Lingjing Jiang et al.
MSYSTEMS (2017)
Compositional data analysis of the microbiome: fundamentals, tools, and challenges
Matthew C. B. Tsilimigras et al.
ANNALS OF EPIDEMIOLOGY (2016)
FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
Jiwoong Kim et al.
BMC BIOINFORMATICS (2016)
Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle
Anastassia Gorvitovskaia et al.
MICROBIOME (2016)
MDSINE: Microbial Dynamical Systems INference Engine for microbiome time-series analyses
Vanni Bucci et al.
GENOME BIOLOGY (2016)
Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease
Jason M. Norman et al.
CELL (2015)
Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn's Disease
James D. Lewis et al.
CELL HOST & MICROBE (2015)
Temporal and spatial variation of the human microbiota during pregnancy
Daniel B. DiGiulio et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
Charlie G. Buffie et al.
NATURE (2015)
Bayesian adaptive Lasso
Chenlei Leng et al.
ANNALS OF THE INSTITUTE OF STATISTICAL MATHEMATICS (2014)
Microbial Enterotypes, Inferred by the Prevotella-to-Bacteroides Ratio, Remained Stable during a 6-Month Randomized Controlled Diet Intervention with the New Nordic Diet
Henrik M. Roager et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
The Treatment-Naive Microbiome in New-Onset Crohn's Disease
Dirk Gevers et al.
CELL HOST & MICROBE (2014)
The Microbiome in Inflammatory Bowel Disease: Current Status and the Future Ahead
Aleksandar D. Kostic et al.
GASTROENTEROLOGY (2014)
Potential of fecal microbiota for early-stage detection of colorectal cancer
Georg Zeller et al.
MOLECULAR SYSTEMS BIOLOGY (2014)
Identifying Keystone Species in the Human Gut Microbiome from Metagenomic Timeseries Using Sparse Linear Regression
Charles K. Fisher et al.
PLOS ONE (2014)
Faecalibacterium prausnitzii upregulates regulatory T cells and anti-inflammatory cytokines in treating TNBS-induced colitis
Xinyun Qiu et al.
JOURNAL OF CROHNS & COLITIS (2013)
Human gut microbiota community structures in urban and rural populations in Russia
Alexander V. Tyakht et al.
NATURE COMMUNICATIONS (2013)
Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota
Richard R. Stein et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Gut microbiota composition correlates with diet and health in the elderly
Marcus J. Claesson et al.
NATURE (2012)
APPLICATIONS OF NEXT-GENERATION SEQUENCING The human microbiome: at the interface of health and disease
Ilseung Cho et al.
NATURE REVIEWS GENETICS (2012)
Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics
Ian Holmes et al.
PLOS ONE (2012)
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
Xochitl C. Morgan et al.
GENOME BIOLOGY (2012)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
The Utility of Biomarkers in the Diagnosis and Therapy of Inflammatory Bowel Disease
James D. Lewis
GASTROENTEROLOGY (2011)
Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives
Marie Joossens et al.
GUT (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
A Pyrosequencing Study in Twins Shows That Gastrointestinal Microbial Profiles Vary With Inflammatory Bowel Disease Phenotypes
Ben P. Willing et al.
GASTROENTEROLOGY (2010)
Local-Learning-Based Feature Selection for High-Dimensional Data Analysis
Yijun Sun et al.
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Data clustering: 50 years beyond K-means
Anil K. Jain
PATTERN RECOGNITION LETTERS (2010)
Metabolomics Reveals Metabolic Biomarkers of Crohn's Disease
Janet Jansson et al.
PLOS ONE (2009)
A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes
Yuzhen Ye et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
The equilibria that allow bacterial persistence in human hosts
Martin J. Blaser et al.
NATURE (2007)
The Human Microbiome Project
Peter J. Turnbaugh et al.
NATURE (2007)
The Montreal classification of inflammatory bowel disease: controversies, consensus, and implications
J. Satsangi et al.
GUT (2006)
Assembly of the human intestinal microbiota
Les Dethlefsen et al.
TRENDS IN ECOLOGY & EVOLUTION (2006)
Calprotectin is a stronger predictive marker of relapse in ulcerative colitis than in Crohn's disease
F Costa et al.
GUT (2005)
Clustering objects on subsets of attributes
JH Friedman et al.
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2004)
Natural history and clinical behavior of Crohn's disease extending beyond two decades
HJ Freeman
JOURNAL OF CLINICAL GASTROENTEROLOGY (2003)
Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data
S Monti et al.
MACHINE LEARNING (2003)
Long-term evolution of disease behavior of Crohn's disease
J Cosnes et al.
INFLAMMATORY BOWEL DISEASES (2002)
Counting the uncountable: Statistical approaches to estimating microbial diversity
JB Hughes et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)
Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness
NJ Gotelli et al.
ECOLOGY LETTERS (2001)
Estimating the number of clusters in a data set via the gap statistic
R Tibshirani et al.
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2001)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)
Share Paper
