Related references
Note: Only part of the references are listed.Prevalence of the pathobiont adherent-invasiveEscherichia coliand inflammatory bowel disease: a systematic review and meta-analysis
Banafsheh Nadalian et al.
JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY (2021)
Adherent-invasive E. coli metabolism of propanediol in Crohn's disease regulates phagocytes to drive intestinal inflammation
Monica Viladomiu et al.
CELL HOST & MICROBE (2021)
Rapid transcriptional and metabolic adaptation of intestinal microbes to host immune activation
Simone Becattini et al.
CELL HOST & MICROBE (2021)
Diet-Microbiota Interactions in Inflammatory Bowel Disease
Kohei Sugihara et al.
NUTRIENTS (2021)
Systematic review with meta-analysis: dietary intake in adults with inflammatory bowel disease
Kelly Lambert et al.
ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2021)
Constructing a gnotobiotic mouse model with a synthetic human gut microbiome to study host-microbe cross talk
Alex Steimle et al.
STAR PROTOCOLS (2021)
Dietary L-serine confers a competitive fitness advantage to Enterobacteriaceae in the inflamed gut
Sho Kitamoto et al.
NATURE MICROBIOLOGY (2020)
An Enteric Pathogen Subverts Colonization Resistance by Evading Competition for Amino Acids in the Gut
Gustavo Caballero-Flores et al.
CELL HOST & MICROBE (2020)
Mucus layer modeling of human colonoids during infection with enteroaggragative E. coli
Lixia Liu et al.
Scientific Reports (2020)
Microbial adaptation to the healthy and inflamed gut environments
Yijie Guo et al.
GUT MICROBES (2020)
Adaptation of adherent-invasiveE. colito gut environment: Impact on flagellum expression and bacterial colonization ability
Gwladys Sevrin et al.
GUT MICROBES (2020)
Pathogenic E-coli Extracts Nutrients from Infected Host Cells Utilizing Injectisome Components
Ritesh Ranjan Pal et al.
CELL (2019)
Serine Metabolism Supports Macrophage IL-1β Production
Arianne E. Rodriguez et al.
CELL METABOLISM (2019)
Flagellin-mediated activation of IL-33-ST2 signaling by a pathobiont promotes intestinal fibrosis
Jin Imai et al.
MUCOSAL IMMUNOLOGY (2019)
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
Jason Lloyd-Price et al.
NATURE (2019)
The Role of Dietary Nutrients in Inflammatory Bowel Disease
Kohei Sugihara et al.
FRONTIERS IN IMMUNOLOGY (2019)
Have you tried spermine? A rapid and cost-effective method to eliminate dextran sodium sulfate inhibition of PCR and RT-PCR
Lukasz Krych et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2018)
Dynamics of metatranscription in the inflammatory bowel disease gut microbiome
Melanie Schirmer et al.
NATURE MICROBIOLOGY (2018)
Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome
Arnau Vich Vila et al.
SCIENCE TRANSLATIONAL MEDICINE (2018)
A Method for Cryogenic Preservation of Human Biopsy Specimens and Subsequent Organoid Culture
Yu-Hwai Tsai et al.
CELLULAR AND MOLECULAR GASTROENTEROLOGY AND HEPATOLOGY (2018)
Modulating the therapeutic response of tumours to dietary serine and glycine starvation
Oliver D. K. Maddocks et al.
NATURE (2017)
IgA-coated E. coli enriched in Crohn's disease spondyloarthritis promote TH17-dependent inflammation
Monica Viladomiu et al.
SCIENCE TRANSLATIONAL MEDICINE (2017)
Serine and Functional Metabolites in Cancer
Alice C. Newman et al.
TRENDS IN CELL BIOLOGY (2017)
Next-Generation Beneficial Microbes: The Case of Akkermansia muciniphila
Patrice D. Cani et al.
FRONTIERS IN MICROBIOLOGY (2017)
Serine Is an Essential Metabolite for Effector T Cell Expansion
Eric H. Ma et al.
CELL METABOLISM (2017)
The Vat-AIEC protease promotes crossing of the intestinal mucus layer by Crohn's disease-associated Escherichia coli
Lucie Gibold et al.
CELLULAR MICROBIOLOGY (2016)
Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology
Maria Carlota Dao et al.
GUT (2016)
A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility
Mahesh S. Desai et al.
CELL (2016)
Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling
Nicholas Edward Ilott et al.
ISME JOURNAL (2016)
Mucosal immunity to pathogenic intestinal bacteria
Araceli Perez-Lopez et al.
NATURE REVIEWS IMMUNOLOGY (2016)
Serine and one-carbon metabolism in cancer
Ming Yang et al.
NATURE REVIEWS CANCER (2016)
Bacterial Metabolism Shapes the Host-Pathogen Interface
Karla D. Passalacqua et al.
MICROBIOLOGY SPECTRUM (2016)
Functional Characterization of Inflammatory Bowel Disease-Associate Gut Dysbiosis in Gnotobiotic Mice
Hiroko Nagao-Kitamoto et al.
CELLULAR AND MOLECULAR GASTROENTEROLOGY AND HEPATOLOGY (2016)
Frenemies: Signaling and Nutritional Integration in Pathogen-Microbiota-Host Interactions
Elizabeth A. Cameron et al.
CELL HOST & MICROBE (2015)
The IbeA Invasin of Adherent-Invasive Escherichia coli Mediates Interaction with Intestinal Epithelia and Macrophages
Roberto J. Cieza et al.
INFECTION AND IMMUNITY (2015)
Epidemiology and risk factors for IBD
Ashwin N. Ananthakrishnan
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2015)
The Roles of Inflammation, Nutrient Availability and the Commensal Microbiota in Enteric Pathogen Infection
Baerbel Stecher
MICROBIOLOGY SPECTRUM (2015)
Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis
Malin E. V. Johansson et al.
GUT (2014)
Inflammation-associated Adherent-invasive Escherichia coli Are Enriched in Pathways for Use of Propanediol and Iron and M-cell Translocation
Belgin Dogan et al.
INFLAMMATORY BOWEL DISEASES (2014)
Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery
Clarissa Schwab et al.
ISME JOURNAL (2014)
An in vivo model of human small intestine using pluripotent stem cells
Carey L. Watson et al.
NATURE MEDICINE (2014)
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
James J. Kozich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Dysbiosis in inflammatory bowel diseases: the oxygen hypothesis
Lionel Rigottier-Gois
ISME JOURNAL (2013)
Serine starvation induces stress and p53-dependent metabolic remodelling in cancer cells
Oliver D. K. Maddocks et al.
NATURE (2013)
Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens
Katharine M. Ng et al.
NATURE (2013)
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
Amandine Everard et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Point Mutations in FimH Adhesin of Crohn's Disease-Associated Adherent-Invasive Escherichia coli Enhance Intestinal Inflammatory Response
Nicolas Dreux et al.
PLOS PATHOGENS (2013)
Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon
Xiaolei Ze et al.
ISME JOURNAL (2012)
Fucose sensing regulates bacterial intestinal colonization
Alline R. Pacheco et al.
NATURE (2012)
NIH Image to ImageJ: 25 years of image analysis
Caroline A. Schneider et al.
NATURE METHODS (2012)
Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes
Jan-Hendrik Hehemann et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Regulated Virulence Controls the Ability of a Pathogen to Compete with the Gut Microbiota
Nobuhiko Kamada et al.
SCIENCE (2012)
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
Xochitl C. Morgan et al.
GENOME BIOLOGY (2012)
Chronic Intestinal Inflammation Induces Stress-Response Genes in Commensal Escherichia coli
Laura G. Patwa et al.
GASTROENTEROLOGY (2011)
Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota
Parameth Thiennimitr et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Crohn's disease-associated adherent-invasive E. coli are selectively favoured by impaired autophagy to replicate intracellularly
Pierre Lapaquette et al.
CELLULAR MICROBIOLOGY (2010)
Abnormally expressed ER stress response chaperone Gp96 in CD favours adherent-invasive Escherichia coli invasion
Nathalie Rolhion et al.
GUT (2010)
Carbon metabolism of intracellular bacterial pathogens and possible links to virulence
Wolfgang Eisenreich et al.
NATURE REVIEWS MICROBIOLOGY (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Crohn's disease adherent-invasive Escherichia coli colonize and induce strong gut inflammation in transgenic mice expressing human CEACAM
Frederic A. Carvalho et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2009)
The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria
Malin E. V. Johansson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
OmpC and the σE regulatory pathway are involved in adhesion and invasion of the Crohn's disease-associated Escherichia coli strain LF82
Nathalie Rolhion et al.
MOLECULAR MICROBIOLOGY (2007)
Muc2-deficient mice spontaneously develop colitis, indicating that Muc2 is critical for colonic protection
Maria Van der Sluis et al.
GASTROENTEROLOGY (2006)
Glycan foraging in vivo by an intestine-adapted bacterial symbiont
JL Sonnenburg et al.
SCIENCE (2005)
Glycolytic and gluconeogenic growth of Escherichia coli O157:H7 (EDL933) and E. coli K-12 (MG1655) in the mouse intestine
RL Miranda et al.
INFECTION AND IMMUNITY (2004)
Akkermansia muciniphila gen. nov., sp nov., a human intestinal mucin-degrading bacterium
M Derrien et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
Adherent invasive Escherichia coli strains from patients with Crohn's disease survive and replicate within macrophages without inducing host cell death
AL Glasser et al.
INFECTION AND IMMUNITY (2001)