4.7 Article

Dual function of SF3B2 on chromatin and RNA to regulate transcription in head and neck squamous cell carcinoma

Related references

Note: Only part of the references are listed.
Review Cell Biology

Regulation of RNA Splicing: Aberrant Splicing Regulation and Therapeutic Targets in Cancer

Koji Kitamura et al.

Summary: RNA splicing is a crucial process in the maturation of mRNA, allowing for diversity in mature mRNA through the inclusion and exclusion of introns and exons. Cancer cells develop cancer-specific mechanisms through abnormal splicing regulation to resist treatment and promote malignancy. Dysregulation of splicing is caused by factors such as mutations in splicing factors and changes in genomic sequences, impacting the splicing profile related to cancer.

CELLS (2021)

Article Multidisciplinary Sciences

The role of Mediator and Little Elongation Complex in transcription termination

Hidehisa Takahashi et al.

NATURE COMMUNICATIONS (2020)

Article Multidisciplinary Sciences

Molecular architecture of the human 17S U2 snRNP

Zhenwei Zhang et al.

NATURE (2020)

Review Cell Biology

The role of 3D genome organization in development and cell differentiation

Hui Zheng et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2019)

Article Multidisciplinary Sciences

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

Yingyao Zhou et al.

NATURE COMMUNICATIONS (2019)

Article Multidisciplinary Sciences

CUT&Tag for efficient epigenomic profiling of small samples and single cells

Hatice S. Kaya-Okur et al.

NATURE COMMUNICATIONS (2019)

Article Oncology

SF3B2-Mediated RNA Splicing Drives Human Prostate Cancer Progression

Norihiko Kawamura et al.

CANCER RESEARCH (2019)

Article Biochemistry & Molecular Biology

Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation

Kyong-Rim Kieffer-Kwon et al.

MOLECULAR CELL (2017)

Article Multidisciplinary Sciences

Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl

Georg A. Busslinger et al.

NATURE (2017)

Article Biochemistry & Molecular Biology

Cohesin Loss Eliminates All Loop Domains

Suhas S. P. Rao et al.

Article Biochemistry & Molecular Biology

Molecular Architecture of SF3b and Structural Consequences of Its Cancer-Related Mutations

Constantin Cretu et al.

MOLECULAR CELL (2016)

Article Biochemical Research Methods

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Mihaela Pertea et al.

NATURE PROTOCOLS (2016)

Review Oncology

RNA splicing factors as oncoproteins and tumour suppressors

Heidi Dvinge et al.

NATURE REVIEWS CANCER (2016)

Article Biochemistry & Molecular Biology

Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing

Takayuki Nojima et al.

Article Multidisciplinary Sciences

Comprehensive genomic characterization of head and neck squamous cell carcinomas

Michael S. Lawrence et al.

NATURE (2015)

Article Multidisciplinary Sciences

Transcription factor trapping by RNA in gene regulatory elements

Alla A. Sigova et al.

SCIENCE (2015)

Article Biochemical Research Methods

DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis

Guangchuang Yu et al.

BIOINFORMATICS (2015)

Review Biochemistry & Molecular Biology

CTCF as a multifunctional protein in genome regulation and gene expression

Somi Kim et al.

EXPERIMENTAL AND MOLECULAR MEDICINE (2015)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Helga Thorvaldsdottir et al.

BRIEFINGS IN BIOINFORMATICS (2013)

Article Multidisciplinary Sciences

Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing

Hojoong Kwak et al.

SCIENCE (2013)

Editorial Material Cell Biology

CTCF: from insulators to alternative splicing regulation

Alberto R. Kornblihtt

CELL RESEARCH (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

The splicing factor SRSF1 regulates apoptosis and proliferation to promote mammary epithelial cell transformation

Olga Anczukow et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu et al.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)

Article Multidisciplinary Sciences

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

Sanjeev Shukla et al.

NATURE (2011)

Letter Biotechnology & Applied Microbiology

Integrative genomics viewer

James T. Robinson et al.

NATURE BIOTECHNOLOGY (2011)

Article Biochemical Research Methods

A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins

Shivendra Kishore et al.

NATURE METHODS (2011)

Article Multidisciplinary Sciences

The Mutational Landscape of Head and Neck Squamous Cell Carcinoma

Nicolas Stransky et al.

SCIENCE (2011)

Article Biotechnology & Applied Microbiology

PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data

David L. Corcoran et al.

GENOME BIOLOGY (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Multidisciplinary Sciences

Regulation of Alternative Splicing by Histone Modifications

Reini F. Luco et al.

SCIENCE (2010)

Article Biotechnology & Applied Microbiology

Evidence-ranked motif identification

Stoyan Georgiev et al.

GENOME BIOLOGY (2010)

Article Biochemical Research Methods

rtracklayer: an R package for interfacing with genome browsers

Michael Lawrence et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

A histone H3 lysine 36 trimethyltransferase links Nkx2-5 to Wolf-Hirschhorn syndrome

Keisuke Nimura et al.

NATURE (2009)

Article Multidisciplinary Sciences

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

Sung Wook Chi et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

The gene encoding the splicing factor SF2/ASF is a proto-oncogene

Rotem Karni et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)

Review Cell Biology

Breaking barriers to transcription elongation

Abbie Saunders et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)