4.7 Article

Nanopore metatranscriptomics reveals cryptic catfish species as potential Shigella flexneri vectors in Kenya

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria

Koji Yahara et al.

Summary: This study utilizes PromethION for long-read metagenomic analysis, identifying hundreds of viral contigs in human saliva and shedding light on the interactions between bacteriophages and host bacteria.

NATURE COMMUNICATIONS (2021)

Article Microbiology

Rapid Diagnostics of Orthopaedic-Implant-Associated Infections Using Nanopore Shotgun Metagenomic Sequencing on Tissue Biopsies

J. Christopher Noone et al.

Summary: This study evaluated a culture-independent, rapid nanopore-based diagnostic protocol for orthopaedic-implant-associated infections, showing that sequencing-based pathogen detection is possible within 24 hours using nanopore technology and outperformed culture-based methods in terms of speed and pathogen detection, while still needing improvement for antibiotic susceptibility testing.

MICROORGANISMS (2021)

Article Microbiology

Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens

Richard M. Leggett et al.

NATURE MICROBIOLOGY (2020)

Letter Biochemistry & Molecular Biology

The proximal origin of SARS-CoV-2

Kristian G. Andersen et al.

NATURE MEDICINE (2020)

Article Biology

NanoPipea web server for nanopore MinION sequencing data analysis

Victoria Shabardina et al.

GIGASCIENCE (2019)

Article Biochemistry & Molecular Biology

How host genetics dictates successful viral zoonosis

Cody J. Warren et al.

PLOS BIOLOGY (2019)

Article Infectious Diseases

Distribution of antimicrobial resistance genes and integrons among Shigella spp. isolated from water sources

Khashayar Shahin et al.

JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE (2019)

Article Microbiology

Fishing in the Soup - Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing

Josephine Gruetzke et al.

FRONTIERS IN MICROBIOLOGY (2019)

Article Marine & Freshwater Biology

Methods for the diagnosis of bacterial fish diseases

Brian Austin

MARINE LIFE SCIENCE & TECHNOLOGY (2019)

Article Biochemical Research Methods

ModelFinder: fast model selection for accurate phylogenetic estimates

Subha Kalyaanamoorthy et al.

NATURE METHODS (2017)

Article Multidisciplinary Sciences

Global hotspots and correlates of emerging zoonotic diseases

Toph Allen et al.

NATURE COMMUNICATIONS (2017)

Article Public, Environmental & Occupational Health

Epidemic characterization and molecular genotyping of Shigella flexneri isolated from calves with diarrhea in Northwest China

Zhen Zhu et al.

ANTIMICROBIAL RESISTANCE AND INFECTION CONTROL (2017)

Review Biotechnology & Applied Microbiology

Major foodborne pathogens in fish and fish products: a review

Aleksandr Novoslavskij et al.

ANNALS OF MICROBIOLOGY (2016)

Article Immunology

Status of vaccine research and development for Shigella

Sachin Mani et al.

VACCINE (2016)

Article Biochemistry & Molecular Biology

Nocturnal claroteine catfishes reveal dual colonisation but a single radiation in Lake Tanganyika

Claire R. Peart et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)

Article Multidisciplinary Sciences

Pathogenicity of Shigella in Chickens

Run Shi et al.

PLOS ONE (2014)

Review Biotechnology & Applied Microbiology

Foodborne Agents Associated with the Consumption of Aquaculture Catfish

Erica McCoy et al.

JOURNAL OF FOOD PROTECTION (2011)

Article Immunology

Elephant-to-Human Transmission of Tuberculosis, 2009

Rendi Murphree et al.

EMERGING INFECTIOUS DISEASES (2011)

Article Evolutionary Biology

A Rapid Bootstrap Algorithm for the RAxML Web Servers

Alexandros Stamatakis et al.

SYSTEMATIC BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Universal primer cocktails for fish DNA barcoding

Natalia V. Ivanova et al.

MOLECULAR ECOLOGY NOTES (2007)

Article Public, Environmental & Occupational Health

Enteropathogenic Escherichia coli O157 in Bangui and N'Goila, Central African Republic:: A brief report

Dinh Thi N. Tuyet et al.

AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE (2006)

Article Biotechnology & Applied Microbiology

Salmonella and the sanitary quality of aquacultured shrimp

B Koonse et al.

JOURNAL OF FOOD PROTECTION (2005)

Review Biotechnology & Applied Microbiology

Metagenomics for studying unculturable microorganisms: cutting the Gordian knot

PD Schloss et al.

GENOME BIOLOGY (2005)