4.7 Article

Discriminating protein tags on a dsDNA construct using a Dual Nanopore Device

Related references

Note: Only part of the references are listed.
Article Chemistry, Multidisciplinary

Electronic Mapping of a Bacterial Genome with Dual Solid-State Nanopores and Active Single-Molecule Control

Arthur Rand et al.

Summary: In this study, an electronic mapping of a bacterial genome using solid-state nanopore technology was presented. The method involves a dual-nano-pore architecture and active control logic to produce single-molecule data and estimate distances between physical tags on double-stranded DNA. Custom analysis methods were developed to generate consensus alignments from multiple scans, and this approach was applied to map the E. coli chromosome. The results showed a significant increase in alignment length with the recapture method, and the intertag resolution was determined to be around 150-166 bp.

ACS NANO (2022)

Review Genetics & Heredity

The epigenetic basis of cellular heterogeneity

Benjamin Carter et al.

Summary: Single-cell sequencing methods have shown heterogeneity in gene expression levels among morphologically similar cells, with epigenomic information contributing to the regulation of gene expression.Recent studies suggest that variations in chromatin organization collectively define gene expression heterogeneity among otherwise similar cells.

NATURE REVIEWS GENETICS (2021)

Article Chemistry, Multidisciplinary

Label-Free Identification of Single Mononucleotides by Nanoscale Electrophoresis

Junseo Choi et al.

Summary: This study introduces a novel nanosensor that can distinguish different nucleotide molecules in a label-free manner using nanoscale electrophoresis. The sensor utilizes a dual nanopore TOF sensor design to measure transient current on a nanochannel column, achieving high accuracy discrimination.

SMALL (2021)

Article Multidisciplinary Sciences

DNA barcodes using a double nanopore system

Swarnadeep Seth et al.

Summary: This study experimentally demonstrates the potential of a double nanopore system for determining DNA barcodes, and identifies tension propagation along the chain's backbone as a key element in chain motion. It suggests the importance of considering the dynamics of the entire chain in measuring DNA barcodes accurately.

SCIENTIFIC REPORTS (2021)

Article Physics, Multidisciplinary

Dynamics of driven polymer transport through a nanopore

Kaikai Chen et al.

Summary: Studying polymer translocation through synthetic nanopores reveals a two-stage behavior, where the translocation initially slows before accelerating close to the end of the process, with distinct local velocity correlations observed as the DNA polymer chain passes through the nanopore. Brownian dynamics simulations show that this behavior is associated with tension propagation, providing a non-equilibrium description of the process.

NATURE PHYSICS (2021)

Article Chemistry, Multidisciplinary

Flossing DNA in a Dual Nanopore Device

Xu Liu et al.

SMALL (2020)

Article Chemistry, Physical

Polymer escape through a three dimensional double-nanopore system

Swarnadeep Seth et al.

JOURNAL OF CHEMICAL PHYSICS (2020)

Article Physics, Fluids & Plasmas

Tug of war in a double-nanopore system

Aniket Bhattacharya et al.

PHYSICAL REVIEW E (2020)

Article Chemistry, Analytical

Single-Molecule Analysis with Solid-State Nanopores

Tim Albrecht

ANNUAL REVIEW OF ANALYTICAL CHEMISTRY, VOL 12 (2019)

Article Chemistry, Multidisciplinary

Controlling DNA Tug-of-War in a Dual Nanopore Device

Xu Liu et al.

SMALL (2019)

Article Chemistry, Multidisciplinary

Specific Biosensing Using DNA Aptamers and Nanopores

Jinglin Kong et al.

ADVANCED FUNCTIONAL MATERIALS (2019)

Article Chemistry, Multidisciplinary

Digital Data Storage Using DNA Nanostructures and Solid-State Nanopores

Kaikai Chen et al.

NANO LETTERS (2019)

Article Chemistry, Multidisciplinary

Single Molecule DNA Resensing Using a Two-Pore Device

Yuning Zhang et al.

SMALL (2018)

Article Multidisciplinary Sciences

Asymmetric dynamics of DNA entering and exiting a strongly confining nanopore

Nicholas A. W. Bell et al.

NATURE COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

Single molecule multiplexed nanopore protein screening in human serum using aptamer modified DNA carriers

Jasmine Y. Y. Sze et al.

NATURE COMMUNICATIONS (2017)

Review Chemistry, Multidisciplinary

Mapping and elucidating the function of modified bases in DNA

Eun-Ang Raiber et al.

NATURE REVIEWS CHEMISTRY (2017)

Article Chemistry, Multidisciplinary

Mechanical Trapping of DNA in a Double-Nanopore System

Sergii Pud et al.

NANO LETTERS (2016)

Article Chemistry, Multidisciplinary

Quantifying Nanomolar Protein Concentrations Using Designed DNA Carriers and Solid-State Nanopores

Jinglin Kong et al.

NANO LETTERS (2016)

Article Biotechnology & Applied Microbiology

Three decades of nanopore sequencing

David Deamer et al.

NATURE BIOTECHNOLOGY (2016)

Article Nanoscience & Nanotechnology

Digitally encoded DNA nanostructures for multiplexed, single-molecule protein sensing with nanopores

Nicholas A. W. Bell et al.

NATURE NANOTECHNOLOGY (2016)

Article Chemistry, Multidisciplinary

Detection of Individual Proteins Bound along DNA Using Solid-State Nanopores

Calin Plesa et al.

NANO LETTERS (2015)

Article Chemistry, Multidisciplinary

DNA Base Detection Using a Single-Layer MoS2

Amir Barati Farimani et al.

ACS NANO (2014)

Review Chemistry, Physical

Polymer translocation: the first two decades and the recent diversification

Vladimir V. Palyulin et al.

SOFT MATTER (2014)

Article Multidisciplinary Sciences

Stiff filamentous virus translocations through solid-state nanopores

Angus McMullen et al.

NATURE COMMUNICATIONS (2014)

Article Chemistry, Physical

Influence of non-universal effects on dynamical scaling in driven polymer translocation

T. Ikonen et al.

JOURNAL OF CHEMICAL PHYSICS (2012)

Article Chemistry, Multidisciplinary

Entropy-Driven Single Molecule Tug-of-War of DNA at Micro-Nanofluidic Interfaces

Jia-Wei Yeh et al.

NANO LETTERS (2012)

Article Chemistry, Multidisciplinary

Electronic Barcoding of a Viral Gene at the Single-Molecule Level

Alon Singer et al.

NANO LETTERS (2012)

Article Physics, Fluids & Plasmas

Process time distribution of driven polymer transport

Takuya Saito et al.

PHYSICAL REVIEW E (2012)

Review Biology

Nanopores: A journey towards DNA sequencing

Meni Wanunu

PHYSICS OF LIFE REVIEWS (2012)

Article Physics, Fluids & Plasmas

Nonequilibrium dynamics of polymer translocation and straightening

Takahiro Sakaue

PHYSICAL REVIEW E (2007)