Related references
Note: Only part of the references are listed.Murine fecal microbiota transfer models selectively colonize human microbes and reveal transcriptional programs associated with response to neoadjuvant checkpoint inhibitors
Fyza Y. Shaikh et al.
CANCER IMMUNOLOGY IMMUNOTHERAPY (2022)
Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps
Bob Chen et al.
CELL (2021)
Automated quality control and cell identification of droplet-based single-cell data using dropkick
Cody N. Heiser et al.
GENOME RESEARCH (2021)
Processing single-cell RNA-seq data for dimension reduction-based analyses using open-source tools
Bob Chen et al.
STAR PROTOCOLS (2021)
Murine Intrarectal Instillation of Purified Recombinant Clostridioides difficile Toxins Enables Mechanistic Studies of Pathogenesis
Nicholas O. Markham et al.
INFECTION AND IMMUNITY (2021)
Human Colon Mucosal Biofilms and Murine Host Communicate via Altered mRNA and microRNA Expression during Cancer
Sarah Tomkovich et al.
MSYSTEMS (2020)
Clostridioides difficile infection damages colonic stem cells via TcdB, impairing epithelial repair and recovery from disease
Steven J. Mileto et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Limiting oxidative DNA damage reduces microbe-induced colitis-associated colorectal cancer
Thergiory Irrazabal et al.
NATURE COMMUNICATIONS (2020)
A Quantitative Framework for Evaluating Single-Cell Data Structure Preservation by Dimensionality Reduction Techniques
Cody N. Heiser et al.
CELL REPORTS (2020)
Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms
Austin N. Southard-Smith et al.
BMC GENOMICS (2020)
Succinate Produced by Intestinal Microbes Promotes Specification of Tuft Cells to Suppress Ileal Inflammation
Amrita Banerjee et al.
GASTROENTEROLOGY (2020)
Host-microbiota maladaptation in colorectal cancer
Alina Janney et al.
NATURE (2020)
The Intestinal Microbiota and Colorectal Cancer
Yiwen Cheng et al.
FRONTIERS IN IMMUNOLOGY (2020)
Clostridioides difficile antibody response of colorectal cancer patients versus clinically healthy individuals
Edrienne Myenna Magat et al.
BIOSCIENCE OF MICROBIOTA FOOD AND HEALTH (2020)
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
Andrew Maltez Thomas et al.
NATURE MEDICINE (2019)
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
Jakob Wirbel et al.
NATURE MEDICINE (2019)
WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
Yuxing Liao et al.
NUCLEIC ACIDS RESEARCH (2019)
Bacteroides fragilis Toxin Coordinates a Pro-carcinogenic Inflammatory Cascade via Targeting of Colonic Epithelial Cells
Liam Chung et al.
CELL HOST & MICROBE (2018)
Structural basis for recognition of frizzled proteins by Clostridium difficile toxin B
Peng Chen et al.
SCIENCE (2018)
dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments
Viktor Petukhov et al.
GENOME BIOLOGY (2018)
SCANPY: large-scale single-cell gene expression data analysis
F. Alexander Wolf et al.
GENOME BIOLOGY (2018)
The myeloid immune signature of enterotoxigenic Bacteroides fragilis-induced murine colon tumorigenesis
E. Thiele Orberg et al.
MUCOSAL IMMUNOLOGY (2017)
Gavage of Fecal Samples From Patients With Colorectal Cancer Promotes Intestinal Carcinogenesis in Germ-Free and Conventional Mice
Sunny H. Wong et al.
GASTROENTEROLOGY (2017)
Analysis of Fusobacterium persistence and antibiotic response in colorectal cancer
Susan Bullman et al.
SCIENCE (2017)
Clostridium difficile colonization in preoperative colorectal cancer patients
Yi Zheng et al.
ONCOTARGET (2017)
High-resolution bacterial 16S rRNA gene profile meta-analysis and biofilm status reveal common colorectal cancer consortia
Julia L. Drewes et al.
NPJ BIOFILMS AND MICROBIOMES (2017)
WNT Signaling and Colorectal Cancer
Emma M. Schatoff et al.
CURRENT COLORECTAL CANCER REPORTS (2017)
Reduction of Murine Colon Tumorigenesis Driven by Enterotoxigenic Bacteroides fragilis Using Cefoxitin Treatment
Christina E. DeStefano Shields et al.
JOURNAL OF INFECTIOUS DISEASES (2016)
Frizzled proteins are colonic epithelial receptors for C. difficile toxin B
Liang Tao et al.
NATURE (2016)
Metabolism Links Bacterial Biofilms and Colon Carcinogenesis
Caroline H. Johnson et al.
CELL METABOLISM (2015)
Defining the Roles of TcdA and TcdB in Localized Gastrointestinal Disease, Systemic Organ Damage, and the Host Response during Clostridium difficile Infections
Glen P. Carter et al.
MBIO (2015)
High occurrence of Fusobacterium nucleatum and Clostridium difficile in the intestinal microbiota of colorectal carcinoma patients
Marcia H. Fukugaiti et al.
BRAZILIAN JOURNAL OF MICROBIOLOGY (2015)
Causal analysis approaches in Ingenuity Pathway Analysis
Andreas Kraemer et al.
BIOINFORMATICS (2014)
Microbes, Microbiota, and Colon Cancer
Cynthia L. Sears et al.
CELL HOST & MICROBE (2014)
Microbiota organization is a distinct feature of proximal colorectal cancers
Christine M. Dejea et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Structure of the gut microbiome following colonization with human feces determines colonic tumor burden
Nielson T. Baxter et al.
MICROBIOME (2014)
Fusobacterium nucleatum Potentiates Intestinal Tumorigenesis and Modulates the Tumor-Immune Microenvironment
Aleksandar D. Kostic et al.
CELL HOST & MICROBE (2013)
Improving pan-genome annotation using whole genome multiple alignment
Samuel V. Angiuoli et al.
BMC BIOINFORMATICS (2011)
Evaluation of new selective culture media and a rapid fluorescence in situ hybridization assay for identification of Clostridium difficile from stool samples
Kathrin Bloedt et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2009)
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
Morgan N. Price et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
Toxin B is essential for virulence of Clostridium difficile
Dena Lyras et al.
NATURE (2009)
Toxin A-negative, toxin B-positive Clostridium difficile
Denise Drudy et al.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2007)
Share Paper
