Related references
Note: Only part of the references are listed.Interactions between nascent proteins translated by adjacent ribosomes drive homomer assembly
Matilde Bertolini et al.
SCIENCE (2021)
Interactions between nascent proteins and the ribosome surface inhibit co-translational folding
Anais M. E. Cassaignau et al.
NATURE CHEMISTRY (2021)
Common sequence motifs of nascent chains engage the ribosome surface and trigger factor
Annika Deckert et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Mechanism of membrane-tethered mitochondrial protein synthesis
Yuzuru Itoh et al.
SCIENCE (2021)
Nascent chains can form co-translational folding intermediates that promote post-translational folding outcomes in a disease-causing protein
Elena Plessa et al.
NATURE COMMUNICATIONS (2021)
Nascent chain dynamics and ribosome interactions within folded ribosome-nascent chain complexes observed by NMR spectroscopy
Charles Burridge et al.
CHEMICAL SCIENCE (2021)
How Does the Ribosome Fold the Proteome?
Anais M. E. Cassaignau et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 89 (2020)
Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation
Victor Tobiasson et al.
ELIFE (2020)
The precious fluorine on the ring: fluorine NMR for biological systems
Andras Boeszoermenyi et al.
JOURNAL OF BIOMOLECULAR NMR (2020)
Cysteine oxidation and disulfide formation in the ribosomal exit tunnel
Linda Schulte et al.
NATURE COMMUNICATIONS (2020)
Force-Profile Analysis of the Cotranslational Folding of HemK and Filamin Domains: Comparison of Biochemical and Biophysical Folding Assays
Grant Kemp et al.
JOURNAL OF MOLECULAR BIOLOGY (2019)
Differences in the path to exit the ribosome across the three domains of life
Khanh Dao Duc et al.
NUCLEIC ACIDS RESEARCH (2019)
Nature and Regulation of Protein Folding on the Ribosome
Christopher A. Waudby et al.
TRENDS IN BIOCHEMICAL SCIENCES (2019)
SPHIRE-crYOLO is a fast and accurate fully automated particle picker for cryo-EM
Thorsten Wagner et al.
COMMUNICATIONS BIOLOGY (2019)
CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens
Jean-Paul Concordet et al.
NUCLEIC ACIDS RESEARCH (2018)
Facile bottom-up synthesis of partially oxidized black phosphorus nanosheets as metal-free photocatalyst for hydrogen evolution
Bin Tian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
How Messenger RNA and Nascent Chain Sequences Regulate Translation Elongation
Junhong Choi et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 87 (2018)
Systematic mapping of free energy landscapes of a growing filamin domain during biosynthesis
Christopher A. Waudby et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Using Scipion for stream image processing at Cryo-EM facilities
J. Gomez-Blanco et al.
JOURNAL OF STRUCTURAL BIOLOGY (2018)
New tools for automated high-resolution cryo-EM structure determination in RELION-3
Jasenko Zivanov et al.
ELIFE (2018)
The shape of the bacterial ribosome exit tunnel affects cotranslational protein folding
Renuka Kudva et al.
ELIFE (2018)
Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
Annemarie Perez Boerema et al.
NATURE PLANTS (2018)
POVME 3.0: Software for Mapping Binding Pocket Flexibility
Jeffrey R. Wagner et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2017)
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
Shawn Q. Zheng et al.
NATURE METHODS (2017)
The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling
Ting Su et al.
ELIFE (2017)
Application of the MAFFT sequence alignment program to large data-reexamination of the usefulness of chained guide trees
Kazunori D. Yamada et al.
BIOINFORMATICS (2016)
A strategy for co-translational folding studies of ribosome-bound nascent chain complexes using NMR spectroscopy
Anais M. E. Cassaignau et al.
NATURE PROTOCOLS (2016)
A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding
Lisa D. Cabrita et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
The extended loops of ribosomal proteins uL4 and uL22 of Escherichia coli contribute to ribosome assembly and protein translation
Marlon G. Lawrence et al.
NUCLEIC ACIDS RESEARCH (2016)
Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors
Alexis I. Cocozaki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding
Lisa D. Cabrita et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
SMOG 2: A Versatile Software Package for Generating Structure-Based Models
Jeffrey K. Noel et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Multigene Editing in the Escherichia coli Genome via the CRISPR-Cas9 System
Yu Jiang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Efficient Sampling of High-Dimensional Free-Energy Landscapes with Parallel Bias Metadynamics
Jim Pfaendtner et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)
CTFFIND4: Fast and accurate defocus estimation from electron micrographs
Alexis Rohou et al.
JOURNAL OF STRUCTURAL BIOLOGY (2015)
Protein synthesis by ribosomes with tethered subunits
Cedric Orelle et al.
NATURE (2015)
History of the ribosome and the origin of translation
Anton S. Petrov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Cotranslational Protein Folding inside the Ribosome Exit Tunnel
Ola B. Nilsson et al.
CELL REPORTS (2015)
Mechanisms of ribosome stalling by SecM at multiple elongation steps
Jun Zhang et al.
ELIFE (2015)
Structure of the Yeast Mitochondrial Large Ribosomal Subunit
Alexey Amunts et al.
SCIENCE (2014)
Protein folding on the ribosome studied using NMR spectroscopy
Christopher A. Waudby et al.
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY (2013)
Efficient determination of diffusion coefficients by monitoring transport during recovery delays in NMR
Rafal Augustyniak et al.
CHEMICAL COMMUNICATIONS (2012)
The Shadow Map: A General Contact Definition for Capturing the Dynamics of Biomolecular Folding and Function
Jeffrey K. Noel et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
Rapid Distinction of Intracellular and Extracellular Proteins Using NMR Diffusion Measurements
Christopher A. Waudby et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)
A biphasic pulling force acts on transmembrane helices during translocon-mediated membrane integration
Nurzian Ismail et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
Protein Folding at the Exit Tunnel
Daria V. Fedyukina et al.
ANNUAL REVIEW OF BIOPHYSICS, VOL 40 (2011)
An Evolved Aminoacyl-tRNA Synthetase with Atypical Polysubstrate Specificity
Douglas D. Young et al.
BIOCHEMISTRY (2011)
The ribosomal tunnel as a functional environment for nascent polypeptide folding and translational stalling
Daniel N. Wilson et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2011)
Software News and Updates MDAnalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations
Naveen Michaud-Agrawal et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2011)
New Scenarios of Protein Folding Can Occur on the Ribosome
Edward P. O'Brien et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)
Cryo-EM structure of the ribosome-SecYE complex in the membrane environment
Jens Frauenfeld et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)
HMMER web server: interactive sequence similarity searching
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2011)
The Ribosome Modulates Nascent Protein Folding
Christian M. Kaiser et al.
SCIENCE (2011)
SecM-Stalled Ribosomes Adopt an Altered Geometry at the Peptidyl Transferase Center
Shashi Bhushan et al.
PLOS BIOLOGY (2011)
MolProbity: all-atom structure validation for macromolecular crystallography
Vincent B. Chen et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Paul D. Adams et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
Protein folding on the ribosome
Lisa D. Cabrita et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2010)
Fityk: a general-purpose peak fitting program
Marcin Wojdyr
JOURNAL OF APPLIED CRYSTALLOGRAPHY (2010)
An Enhanced System for Unnatural Amino Acid Mutagenesis in E. coli
Travis S. Young et al.
JOURNAL OF MOLECULAR BIOLOGY (2010)
α-Helical nascent polypeptide chains visualized within distinct regions of the ribosomal exit tunnel
Shashi Bhushan et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
Andrew M. Waterhouse et al.
BIOINFORMATICS (2009)
PLUMED: A portable plugin for free-energy calculations with molecular dynamics
Massimiliano Bonomi et al.
COMPUTER PHYSICS COMMUNICATIONS (2009)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
Converging concepts of protein folding in vitro and in vivo
F. Ulrich Hartl et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
Probing ribosome-nascent chain complexes produced in vivo by NMR spectroscopy
Lisa D. Cabrita et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Protein folding by domain v of Escherichia coli 23S rRNA:: Specificity of RNA-protein interactions
Dibyendu Samanta et al.
JOURNAL OF BACTERIOLOGY (2008)
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
Berk Hess et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
Signal sequence-independent membrane targeting of ribosomes containing short nascent peptides within the exit tunnel
Thomas Bornemann et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)
Revisiting the mechanism of macrolide-antibiotic resistance mediated by ribosomal protein L22
Sean D. Moore et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Novel mutations in ribosomal proteins L4 and L22 that confer erythromycin resistance in Escherichia coli
Sephorah Zaman et al.
MOLECULAR MICROBIOLOGY (2007)
Structure and dynamics of a ribosome-bound nascent chain by NMR spectroscopy
Shang-Te Danny Hsu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Structure of the 70S ribosome complexed with mRNA and tRNA
Maria Selmer et al.
SCIENCE (2006)
MultiSeq: unifying sequence and structure data for evolutionary analysis
Elijah Roberts et al.
BMC BIOINFORMATICS (2006)
Translation arrest requires two-way communication between a nascent polypeptide and the ribosome
Cheryl A. Woolhead et al.
MOLECULAR CELL (2006)
Structures of the bacterial ribosome at 3.5 Å resolution
BS Schuwirth et al.
SCIENCE (2005)
Protein length in eukaryotic and prokaryotic proteomes
L Brocchieri et al.
NUCLEIC ACIDS RESEARCH (2005)
Coot:: model-building tools for molecular graphics
P Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Secretion monitor, SecM, undergoes self-translation arrest in the cytosol
H Nakatogawa et al.
MOLECULAR CELL (2001)
The structural basis of ribosome activity in peptide bond synthesis
P Nissen et al.
SCIENCE (2000)
Share Paper
