4.8 Article

SpyChIP identifies cell type-specific transcription factor occupancy from complex tissues

Related references

Note: Only part of the references are listed.
Article Genetics & Heredity

Scarless engineering of the Drosophila genome near any site-specific integration site

Siqian Feng et al.

Summary: The technique described in the study offers a simple and efficient method for scarless engineering of Drosophila genomic sequences near any landing site containing an inverted attP cassette. It combines phiC31 integrase-mediated site-specific integration and homing nuclease-mediated resolution of local duplications, allowing for efficient modification of alleles in a scarless manner. This method may also be applicable to other species.

GENETICS (2021)

Article Biochemistry & Molecular Biology

Cell-type-specific Hox regulatory strategies orchestrate tissue identity

Ryan Loker et al.

Summary: Hox proteins modulate segment identity by changing chromatin accessibility and binding of transcription factors like Scalloped in a spatially-regulated manner, with their transcriptional activity dependent on the availability of cofactors.

CURRENT BIOLOGY (2021)

Article Biochemical Research Methods

HiChIP: efficient and sensitive analysis of protein-directed genome architecture

Maxwell R. Mumbach et al.

NATURE METHODS (2016)

Article Biochemistry & Molecular Biology

deepTools2: a next generation web server for deep-sequencing data analysis

Fidel Ramirez et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Multidisciplinary Sciences

Programmable polyproteams built using twin peptide superglues

Gianluca Veggiani et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Genetics & Heredity

To Be Specific or Not: The Critical Relationship Between Hox And TALE Proteins

Samir Merabet et al.

TRENDS IN GENETICS (2016)

Article Cell Biology

A Common Set of DNA Regulatory Elements Shapes Drosophila Appendages

Daniel J. McKay et al.

DEVELOPMENTAL CELL (2013)

Article Multidisciplinary Sciences

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

Caryn S. Ross-Innes et al.

NATURE (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Peptide tag forming a rapid covalent bond to a protein, through engineering a bacterial adhesin

Bijan Zakeri et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Genetics & Heredity

ChIP-seq: advantages and challenges of a maturing technology

Peter J. Park

NATURE REVIEWS GENETICS (2009)

Article Biotechnology & Applied Microbiology

Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang et al.

GENOME BIOLOGY (2008)