Related references
Note: Only part of the references are listed.Genomic Rearrangements and Sequence Evolution across Brown Algal Organelles
Samuel Starko et al.
GENOME BIOLOGY AND EVOLUTION (2021)
Historical biogeography of the widespread macroalga Sargassum (Fucales, Phaeophyceae)
Zhi Ting Yip et al.
JOURNAL OF PHYCOLOGY (2020)
Organelle inheritance and genome architecture variation in isogamous brown algae
Ji Won Choi et al.
SCIENTIFIC REPORTS (2020)
Comparative Genomic Analysis Reveals the Mechanism Driving the Diversification of Plastomic Structure in Taxaceae Species
Yue Zhang et al.
FRONTIERS IN GENETICS (2020)
Phylogeny and Evolution of the Brown Algae
Trevor T. Bringloe et al.
CRITICAL REVIEWS IN PLANT SCIENCES (2020)
OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
Stephan Greiner et al.
NUCLEIC ACIDS RESEARCH (2019)
A comprehensive kelp phylogeny sheds light on the evolution of an ecosystem
Samuel Starko et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)
Understanding the Evolution of Mitochondrial Genomes in Phaeophyceae Inferred from Mitogenomes of Ishige okamurae (Ishigeales) and Dictyopteris divaricata (Dictyotales)
Feng Liu et al.
JOURNAL OF MOLECULAR EVOLUTION (2019)
IRscope: an online program to visualize the junction sites of chloroplast genomes
Ali Amiryousefi et al.
BIOINFORMATICS (2018)
Organelle genomes of Sargassum confusum (Fucales, Phaeophyceae): mtDNA vs cpDNA
Feng Liu et al.
JOURNAL OF APPLIED PHYCOLOGY (2018)
A PHYLOGEOGRAPHIC INVESTIGATION OF THE KELP GENUS LAMINARIA (LAMINARIALES, PHAEOPHYCEAE), WITH EMPHASIS ON THE SOUTH ATLANTIC OCEAN
Mark D. Rothman et al.
JOURNAL OF PHYCOLOGY (2017)
Plastid Genome of Dictyopteris divaricata (Dictyotales, Phaeophyceae): Understanding the Evolution of Plastid Genomes in Brown Algae
Feng Liu et al.
MARINE BIOTECHNOLOGY (2017)
Chloroplast genome of Sargassum horneri (Sargassaceae, Phaeophyceae): comparative chloroplast genomics of brown algae
Feng Liu et al.
JOURNAL OF APPLIED PHYCOLOGY (2016)
Complete plastid genome of an ecologically important brown alga Sargassum thunbergii (Fucales, Phaeophyceae)
Ji Hyun Yang et al.
MARINE GENOMICS (2016)
Highly Conserved Mitochondrial Genomes among Multicellular Red Algae of the Florideophyceae
Eun Chan Yang et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Complete Plastid Genome of the Brown Alga Costaria costata (Laminariales, Phaeophyceae)
Lei Zhang et al.
PLOS ONE (2015)
Complete Plastid Genome Sequence of the Brown Alga Undaria pinnatifida
Lei Zhang et al.
PLOS ONE (2015)
Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes
David Roy Smith et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Complete mitochondrial genome of the brown alga Sargassum horneri (Sargassaceae, Phaeophyceae): genome organization and phylogenetic analyses
Feng Liu et al.
JOURNAL OF APPLIED PHYCOLOGY (2015)
Complete mitochondrial genome of Undaria pinnatifida (Alariaceae, Laminariales, Phaeophyceae)
Tian-Yong Li et al.
MITOCHONDRIAL DNA (2015)
The Complete Chloroplast and Mitochondrial Genomes of the Green Macroalga Ulva sp UNA00071828 (Ulvophyceae, Chlorophyta)
James T. Melton et al.
PLOS ONE (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Massive difference in synonymous substitution rates among mitochondrial, plastid, and nuclear genes of Phaeocystis algae
David Roy Smith et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)
DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution
Xuhua Xia
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Chloroplast genome of one brown seaweed, Saccharina japonica (Laminariales, Phaeophyta): Its structural features and phylogenetic analyses with other photosynthetic plastids
Xiuliang Wang et al.
MARINE GENOMICS (2013)
Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times
Mario dos Reis et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Mitochondrial DNA sequence variation of four Saccharina species (Laminariales, Phaeophyceae) growing in Japan
Norishige Yotsukura et al.
JOURNAL OF APPLIED PHYCOLOGY (2010)
A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): Investigating the evolutionary nature of the brown algal crown radiation
Thomas Silberfeld et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)
Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids
Gildas Le Corguille et al.
BMC EVOLUTIONARY BIOLOGY (2009)
Endangered algal species and how to protect them
Juliet Brodie et al.
PHYCOLOGIA (2009)
Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
Rui-Jiang Wang et al.
BMC EVOLUTIONARY BIOLOGY (2008)
Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants
Guy Drouin et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2008)
Clustal W and clustal X version 2.0
M. A. Larkin et al.
BIOINFORMATICS (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen et al.
NUCLEIC ACIDS RESEARCH (2007)
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
Gerard Talavera et al.
SYSTEMATIC BIOLOGY (2007)
Complete mitochondrial genomes of the three brown algae (Heterokonta : Phaeophyceae) Dictyota dichotoma, Fucus vesiculosus and Desmarestia viridis
MPO Secq et al.
CURRENT GENETICS (2006)
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
P Schattner et al.
NUCLEIC ACIDS RESEARCH (2005)
Automatic annotation of organellar genomes with DOGMA
SK Wyman et al.
BIOINFORMATICS (2004)
Mauve: Multiple alignment of conserved genomic sequence with rearrangements
ACE Darling et al.
GENOME RESEARCH (2004)
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
S Guindon et al.
SYSTEMATIC BIOLOGY (2003)
MRBAYES: Bayesian inference of phylogenetic trees
JP Huelsenbeck et al.
BIOINFORMATICS (2001)
A comprehensive phylogeny of the Phaeophyceae based on nrDNA sequences resolves the earliest divergences
F Rousseau et al.
COMPTES RENDUS DE L ACADEMIE DES SCIENCES SERIE III-SCIENCES DE LA VIE-LIFE SCIENCES (2001)
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
ZH Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2000)