4.8 Article

mRNA- and factor-driven dynamic variability controls eIF4F-cap recognition for translation initiation

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

capCLIP: a new tool to probe translational control in human cells through capture and identification of the eIF4E-mRNA interactome

Kirk B. Jensen et al.

Summary: This study introduces a novel method, capCLIP, to comprehensively capture and quantify the eIF4E 'cap-ome' and investigate the biological consequences of eIF4E-cap binding in different cellular contexts. The results from analyzing human cells with mTORC1 inhibitor rapamycin and examining phosphorylation of eIF4E demonstrate that capCLIP is a valuable tool for studying the function of eIF4E and other cap-binding proteins.

NUCLEIC ACIDS RESEARCH (2021)

Article Biochemistry & Molecular Biology

Modulation of RNA Condensation by the DEAD-Box Protein eIF4A

Devin Tauber et al.

Review Biochemistry & Molecular Biology

The landscape of eukaryotic mRNPs

Anthony Khong et al.

Article Cell Biology

Rocaglates Induce Gain-of-Function Alterations to eIF4A and eIF4F

Jennifer Chu et al.

CELL REPORTS (2020)

Review Cell Biology

Heterogeneity in mRNA Translation

Stijn Sonneveld et al.

TRENDS IN CELL BIOLOGY (2020)

Article Biochemistry & Molecular Biology

Selective 40S Footprinting Reveals Cap-Tethered Ribosome Scanning in Human Cells

Jonathan Bohlen et al.

MOLECULAR CELL (2020)

Article Multidisciplinary Sciences

Structure of a human 48S translational initiation complex

Jailson Brito Querido et al.

SCIENCE (2020)

Article Chemistry, Multidisciplinary

Heterogeneous Dynamics of Protein-RNA Interactions across Transcriptome-Derived Messenger RNA Populations

Burak Cetin et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2020)

Article Cell Biology

Single-Molecule Fluorescence Applied to Translation

Arjun Prabhakar et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2019)

Article Cell Biology

Toward a Kinetic Understanding of Eukaryotic Translation

Masaaki Sokabe et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2019)

Article Biochemistry & Molecular Biology

Single-stranded regions modulate conformational dynamics and ATPase activity of eIF4A to optimize 5-UTR unwinding

Alexandra Zoi Andreou et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Biochemistry & Molecular Biology

The Organizing Principles of Eukaryotic Ribosome Recruitment

Jerry Pelletier et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 88 (2019)

Article Multidisciplinary Sciences

Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates

Andrea Riba et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Multidisciplinary Sciences

eIF5B gates the transition from translation initiation to elongation

Jinfan Wang et al.

NATURE (2019)

Review Genetics & Heredity

Heterogeneity and specialized functions of translation machinery: from genes to organisms

Naomi R. Genuth et al.

NATURE REVIEWS GENETICS (2018)

Review Cell Biology

A brave new world of RNA-binding proteins

Matthias W. Hentze et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)

Article Cell Biology

Translation initiation by cap-dependent ribosome recruitment: Recent insights and open questions

Nikolay E. Shirokikh et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2018)

Article Biochemistry & Molecular Biology

Spatial Organization of Single mRNPs at Different Stages of the Gene Expression Pathway

Srivathsan Adivarahan et al.

MOLECULAR CELL (2018)

Article Biochemistry & Molecular Biology

Revisiting the Closed-Loop Model and the Nature of mRNA 5′-3′ Communication

Quentin Vicens et al.

MOLECULAR CELL (2018)

Article Multidisciplinary Sciences

mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distances

Wan-Jung C. Lai et al.

NATURE COMMUNICATIONS (2018)

Article Biotechnology & Applied Microbiology

Dynamic changes in eIF4F-mRNA interactions revealed by global analyses of environmental stress responses

Joseph L. Costello et al.

GENOME BIOLOGY (2017)

Article Biochemistry & Molecular Biology

The Structures of eIF4E-eIF4G Complexes Reveal an Extended Interface to Regulate Translation Initiation

Stefan Gruener et al.

MOLECULAR CELL (2016)

Article Multidisciplinary Sciences

Dynamics of ribosome scanning and recycling revealed by translation complex profiling

Stuart K. Archer et al.

NATURE (2016)

Article Multidisciplinary Sciences

eIF4B stimulates translation of long mRNAs with structured 5′ UTRs and low closed-loop potential but weak dependence on eIF4G

Neelam Dabas Sen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Biochemistry & Molecular Biology

Signalling to eIF4E in cancer

Nadeem Siddiqui et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2015)

Review Biochemistry & Molecular Biology

Quantitative studies of mRNA recruitment to the eukaryotic ribosome

Christopher S. Fraser

BIOCHIMIE (2015)

Review Biochemistry & Molecular Biology

eIF4F: A Retrospective

William C. Merrick

JOURNAL OF BIOLOGICAL CHEMISTRY (2015)

Article Multidisciplinary Sciences

Translation initiation mediated by RNA looping

Ki Young Paek et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biotechnology & Applied Microbiology

Global mRNA selection mechanisms for translation initiation

Joseph Costello et al.

GENOME BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Conformation transitions of eukaryotic polyribosomes during multi-round translation

Zhanna A. Afonina et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

elF4B and elF4G Jointly Stimulate elF4A ATPase and Unwinding Activities by Modulation of the elF4A Conformational Cycle

Alexandra Zoi Andreou et al.

JOURNAL OF MOLECULAR BIOLOGY (2014)

Article Multidisciplinary Sciences

High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence

Jin Chen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biochemistry & Molecular Biology

An in vivo control map for the eukaryotic mRNA translation machinery

Helena Firczuk et al.

MOLECULAR SYSTEMS BIOLOGY (2013)

Article Multidisciplinary Sciences

Human eIF4E promotes mRNA restructuring by stimulating eIF4A helicase activity

Kateryna Feoktistova et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biochemistry & Molecular Biology

Dynamic Recognition of the mRNA Cap by Saccharomyces cerevisiae eIF4E

Sean E. O'Leary et al.

STRUCTURE (2013)

Article Cell Biology

Principles of Translational Control: An Overview

John W. B. Hershey et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2012)

Article Cell Biology

The Mechanism of Eukaryotic Translation Initiation: New Insights and Challenges

Alan G. Hinnebusch et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Depletion of eIF4G from yeast cells narrows the range of translational efficiencies genome-wide

Eun-Hee Park et al.

BMC GENOMICS (2011)

Review Cell Biology

From unwinding to clamping - the DEAD box RNA helicase family

Patrick Linder et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2011)

Article Biochemistry & Molecular Biology

The ends of a large RNA molecule are necessarily close

Aron M. Yoffe et al.

NUCLEIC ACIDS RESEARCH (2011)

Review Biochemistry & Molecular Biology

Power of Yeast for Analysis of Eukaryotic Translation Initiation

Michael Altmann et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Review Cell Biology

The mechanism of eukaryotic translation initiation and principles of its regulation

Richard J. Jackson et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)

Article Biotechnology & Applied Microbiology

Properties of untranslated regions of the S. cerevisiae genome

Tamir Tuller et al.

BMC GENOMICS (2009)

Article Biochemistry & Molecular Biology

Topology and Regulation of the Human eIF4A/4G/4H Helicase Complex in Translation Initiation

Assen Marintchev et al.

Review Biochemistry & Molecular Biology

Regulation of Translation Initiation in Eukaryotes: Mechanisms and Biological Targets

Nahum Sonenberg et al.

Article Biochemistry & Molecular Biology

General RNA-binding proteins have a function in poly(A)-binding protein-dependent translation

Yuri V. Svitkin et al.

EMBO JOURNAL (2009)

Article Biochemistry & Molecular Biology

Intrinsic RNA Binding by the Eukaryotic Initiation Factor 4F Depends on a Minimal RNA Length but Not on the m7G Cap

Nicholas M. Kaye et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Biochemistry & Molecular Biology

Kinetic Analysis of Late Steps of Eukaryotic Translation Initiation

Michael G. Acker et al.

JOURNAL OF MOLECULAR BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Kinetic mechanism for assembly of the m7GpppG•eIF4E•eIF4G complex

Sergey V. Slepenkov et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Biochemical Research Methods

Zero-mode waveguides: Sub-wavelength nanostructures for single molecule studies at high concentrations

Jose M. Moran-Mirabal et al.

METHODS (2008)

Article Biochemistry & Molecular Biology

Step-wise formation of eukaryotic double-row polyribosomes and circular translation of polysomal mRNA

Gelina S. Kopeina et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Multidisciplinary Sciences

Crystal structure of the yeast eIF4A-eIF4G complex:: An RNA-helicase controlled by protein-protein interactions

Patrick Schuetz et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

Cap-dependent eukaryotic initiation factor-mRNA interactions probed by cross-linking

Lisa Lindqvist et al.

Article Multidisciplinary Sciences

The eukaryotic initiation factor (eIF) 5 HEAT domain mediates multifactor assembly and scanning with distinct interfaces to eIF1, eIF2, eIF3, and eIF4G

Y Yamamoto et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Dissecting eukaryotic translation and its control by ribosome density mapping

Y Arava et al.

NUCLEIC ACIDS RESEARCH (2005)

Review Cell Biology

Molecular mechanisms of translational control

F Gebauer et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Thermodynamics of mRNA 5′ cap binding by eukaryotic translation initiation factor eIF4E

A Niedzwiecka et al.

BIOCHEMISTRY (2004)

Article Multidisciplinary Sciences

Global analysis of protein expression in yeast

S Ghaemmaghami et al.

NATURE (2003)

Article Biochemistry & Molecular Biology

Intracellular translation initiation factor levels in Saccharomyces cerevisiae and their role in cap-complex function

T von der Haar et al.

MOLECULAR MICROBIOLOGY (2002)

Article Biochemistry & Molecular Biology

Stabilization of eukaryotic initiation factor 4E binding to the mRNA 5′-cap by domains of eIF4G

T von der Haar et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)