Related references
Note: Only part of the references are listed.Plague reservoir species throughout the world
Ahmad Mahmoudi et al.
INTEGRATIVE ZOOLOGY (2021)
Ten millennia of hepatitis B virus evolution
Arthur Kocher et al.
SCIENCE (2021)
Plague and the Fall of Baghdad (1258)
Nahyan Fancy et al.
MEDICAL HISTORY (2021)
A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis
Julian Susat et al.
CELL REPORTS (2021)
Laying the Corpses to Rest: Grain, Embargoes, and Yersinia pestis in the Black Sea, 1346-48
Hannah Barker
SPECULUM-A JOURNAL OF MEDIEVAL STUDIES (2021)
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
Zhemin Zhou et al.
GENOME RESEARCH (2020)
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process
Felix M. Key et al.
NATURE ECOLOGY & EVOLUTION (2020)
Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations
Sebastian Duchene et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Manual and automated preparation of single-stranded DNA libraries for the sequencing of DNA from ancient biological remains and other sources of highly degraded DNA
Marie-Theres Gansauge et al.
NATURE PROTOCOLS (2020)
A treponemal genome from an historic plague victim supports a recent emergence of yaws and its presence in 15th century Europe
Karen Giffin et al.
SCIENTIFIC REPORTS (2020)
A genomic and historical synthesis of plague in 18th century Eurasia
Meriam Guellil et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
A seventeenth-centuryMycobacterium tuberculosisgenome supports a Neolithic emergence of theMycobacterium tuberculosiscomplex
Susanna Sabin et al.
GENOME BIOLOGY (2020)
Diverse variola virus (smallpox) strains were widespread in northern Europe in the Viking Age
Barbara Muehlemann et al.
SCIENCE (2020)
Ancient pathogen genomics as an emerging tool for infectious disease research
Maria A. Spyrou et al.
NATURE REVIEWS GENETICS (2019)
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541-750)
Marcel Keller et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes
Maria A. Spyrou et al.
NATURE COMMUNICATIONS (2019)
Death by the Lake: Mortality Crisis in Early Fourteenth-Century Central Asia
Philip Slavin
JOURNAL OF INTERDISCIPLINARY HISTORY (2019)
HOPS: automated detection and authentication of pathogen DNA in archaeological remains
Ron Huebler et al.
GENOME BIOLOGY (2019)
137 ancient human genomes from across the Eurasian steppes
Peter de Barros Damgaard et al.
NATURE (2018)
Human ectoparasites and the spread of plague in Europe during the Second Pandemic
Katharine R. Dean et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague
Maria A. Spyrou et al.
NATURE COMMUNICATIONS (2018)
Phylogeny and Classification of Yersinia pestis Through the Lens of Strains From the Plague Foci of Commonwealth of Independent States
Vladimir V. Kutyrev et al.
FRONTIERS IN MICROBIOLOGY (2018)
Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico
Ashild J. Vagene et al.
NATURE ECOLOGY & EVOLUTION (2018)
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Zhemin Zhou et al.
GENOME RESEARCH (2018)
Integrative approach using Yersinia pestis genomes to revisit the historical landscape of plague during the Medieval Period
Amine Namouchi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
The Black Death in Iran, according to Iranian Historical Accounts from the Fourteenth through Fifteenth Centuries
Ahmad Fazlinejad et al.
JOURNAL OF PERSIANATE STUDIES (2018)
Reflections on plague in African history (14th-19th c.)
Gerard Chouin
AFRIQUES-DEBATS METHODES ET TERRAINS D HISTOIRE (2018)
TreeTime: Maximum-likelihood phylodynamic analysis
Pavel Sagulenko et al.
VIRUS EVOLUTION (2018)
Yersinia pestis strains of ancient phylogenetic branch 0. ANT are widely spread in the high-mountain plague foci of Kyrgyzstan
Galina A. Eroshenko et al.
PLOS ONE (2017)
Network theory may explain the vulnerability of medieval human settlements to the Black Death pandemic
Jose M. Gomez et al.
SCIENTIFIC REPORTS (2017)
The Stone Age Plague and Its Persistence in Eurasia
Aida Andrades Valtuena et al.
CURRENT BIOLOGY (2017)
Eight Whole-Genome Assemblies of Yersinia pestis subsp. microtus bv. caucasica Isolated from the Common Vole (Microtus arvalis) Plague Focus in Dagestan, Russia
Angelina A. Kislichkina et al.
GENOME ANNOUNCEMENTS (2017)
Plague and Lethal Epidemics in the Pre-Industrial World
Guido Alfani et al.
JOURNAL OF ECONOMIC HISTORY (2017)
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary et al.
NUCLEIC ACIDS RESEARCH (2016)
A High-Coverage Yersinia pestis Genome from a Sixth-Century Justinianic Plague Victim
Michal Feldman et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
Daniel H. Huson et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus
Kirsten I. Bos et al.
ELIFE (2016)
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
Andrew Rambaut et al.
VIRUS EVOLUTION (2016)
EAGER: efficient ancient genome reconstruction
Alexander Peltzer et al.
GENOME BIOLOGY (2016)
Genome-wide patterns of selection in 230 ancient Eurasians
Iain Mathieson et al.
NATURE (2015)
Massive migration from the steppe was a source for Indo-European languages in Europe
Wolfgang Haak et al.
NATURE (2015)
An early modern human from Romania with a recent Neanderthal ancestor
Qiaomei Fu et al.
NATURE (2015)
Climate-driven introduction of the Black Death and successive plague reintroductions into Europe
Boris V. Schmid et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
fastcluster: Fast Hierarchical, Agglomerative Clustering Routines forRandPython
Daniel Müllner
Journal of Statistical Software (2015)
Partial uracil - DNA - glycosylase treatment for screening of ancient DNA
Nadin Rohland et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)
Tularemia and plague survey in rodents in an earthquake zone in southeastern Iran
Behzad Pourhossein et al.
EPIDEMIOLOGY AND HEALTH (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis
Kirsten I. Bos et al.
NATURE (2014)
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
Hakon Jonsson et al.
BIOINFORMATICS (2013)
Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)
Tanja Stadler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis
Yujun Cui et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
DNA analysis of an early modern human from Tianyuan Cave, China
Qiaomei Fu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
Jesse Dabney et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
Martin Kircher et al.
NUCLEIC ACIDS RESEARCH (2012)
A draft genome of Yersinia pestis from victims of the Black Death
Kirsten I. Bos et al.
NATURE (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death
Verena J. Schuenemann et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Picante: R tools for integrating phylogenies and ecology
Steven W. Kembel et al.
BIOINFORMATICS (2010)
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity
Giovanna Morelli et al.
NATURE GENETICS (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Rodents for comparative aging studies: from mice to beavers
Vera Gorbunova et al.
AGE (2008)
The Black Death and the origins of the 'Great Divergence' across Europe, 1300-1600
Sevket Pamuk
EUROPEAN REVIEW OF ECONOMIC HISTORY (2007)
Bayesian coalescent inference of past population dynamics from molecular sequences
AJ Drummond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Intraspecific diversity of Yersinia pestis
AP Anisimov et al.
CLINICAL MICROBIOLOGY REVIEWS (2004)
Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus
DS Zhou et al.
JOURNAL OF BACTERIOLOGY (2004)
Rats, communications, and plague: Toward an ecological history
M McCormick
JOURNAL OF INTERDISCIPLINARY HISTORY (2003)
Share Paper
