Related references
Note: Only part of the references are listed.Engineered virus-like particles for efficient in vivo delivery of therapeutic proteins
Samagya Banskota et al.
CELL (2022)
Immature HIV-1 assembles from Gag dimers leaving partial hexamers at lattice edges as potential substrates for proteolytic maturation
Aaron Tan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
A multiscale coarse-grained model of the SARS-CoV-2 virion
Alvin Yu et al.
BIOPHYSICAL JOURNAL (2021)
Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer
Martin Obr et al.
NATURE COMMUNICATIONS (2021)
Biochemical Reconstitution of HIV-1 Assembly and Maturation
Iga Kucharska et al.
JOURNAL OF VIROLOGY (2020)
Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly
Robert A. Dick et al.
PLOS PATHOGENS (2020)
In Vitro Quantification of the Effects of IP6 and Other Small Polyanions on Immature HIV-1 Particle Assembly and Core Stability
Alzbeta Dostalkova et al.
JOURNAL OF VIROLOGY (2020)
Identification of the initial nucleocapsid recognition element in the HIV-1 RNA packaging signal
Pengfei Ding et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Binding mechanism of the matrix domain of HIV-1 gag on lipid membranes
Viviana Monje-Galvan et al.
ELIFE (2020)
Structural and mechanistic bases for a potent HIV-1 capsid inhibitor
Stephanie M. Bester et al.
SCIENCE (2020)
Multiconfigurational Coarse-Grained Molecular Dynamics
Morris E. Sharp et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2019)
A lipid-based partitioning mechanism for selective incorporation of proteins into membranes of HIV particles
Prabuddha Sengupta et al.
NATURE CELL BIOLOGY (2019)
Understanding Missing Entropy in Coarse-Grained Systems: Addressing Issues of Representability and Transferability
Jaehyeok Jin et al.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2019)
Off-Pathway Assembly: A Broad-Spectrum Mechanism of Action for Drugs That Undermine Controlled HIV-1 Viral Capsid Formation
Alexander J. Pak et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2019)
Maturation of retroviruses
Owen Pornillos et al.
CURRENT OPINION IN VIROLOGY (2019)
Cellular IP6 Levels Limit HIV Production while Viruses that Cannot Efficiently Package IP6 Are Attenuated for Infection and Replication
Donna L. Mallery et al.
CELL REPORTS (2019)
Virus-Like Particle Engineering: From Rational Design to Versatile Applications
Xuanwei Ding et al.
BIOTECHNOLOGY JOURNAL (2018)
Roles of Gag-RNA interactions in HIV-1 virus assembly deciphered by single-molecule localization microscopy
Yantao Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Virus-Like Particle Engineering: From Rational Design to Versatile Applications
Xuanwei Ding et al.
BIOTECHNOLOGY JOURNAL (2018)
Timing of ESCRT-III protein recruitment and membrane scission during HIV-1 assembly
Daniel S. Johnson et al.
ELIFE (2018)
Inositol phosphates are assembly co-factors for HIV-1
Robert A. Dick et al.
NATURE (2018)
High-resolution structures of HIV-1 Gag cleavage mutants determine structural switch for virus maturation
Simone Mattei et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
CHARMM36m: an improved force field for folded and intrinsically disordered proteins
Jing Huang et al.
NATURE METHODS (2017)
Immature HIV-1 lattice assembly dynamics are regulated by scaffolding from nucleic acid and the plasma membrane
Alexander J. Pak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Quenching protein dynamics interferes with HIV capsid maturation
Mingzhang Wang et al.
NATURE COMMUNICATIONS (2017)
Dimerization of the SP1 Region of HIV-1 Gag Induces a Helical Conformation and Association into Helical Bundles: Implications for Particle Assembly
Siddhartha A. K. Datta et al.
JOURNAL OF VIROLOGY (2016)
On the representability problem and the physical meaning of coarse-grained models
Jacob W. Wagner et al.
JOURNAL OF CHEMICAL PHYSICS (2016)
An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation
Florian K. M. Schur et al.
SCIENCE (2016)
Coarse-grained simulation reveals key features of HIV-1 capsid self-assembly
John M. A. Grime et al.
NATURE COMMUNICATIONS (2016)
Engineering virus-like particles as vaccine platforms
Kathryn M. Frietze et al.
CURRENT OPINION IN VIROLOGY (2016)
Crystal structure of an HIV assembly and maturation switch
Jonathan M. Wagner et al.
ELIFE (2016)
The Statistical Mechanics of Dynamic Pathways to Self-Assembly
Stephen Whitelam et al.
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 66 (2015)
X-ray crystal structures of native HIV-1 capsid protein reveal conformational variability
Anna T. Gres et al.
SCIENCE (2015)
Structural and molecular determinants of HIV-1 Gag binding to the plasma membrane
Jiri Vlach et al.
FRONTIERS IN MICROBIOLOGY (2015)
Structure of the immature HIV-1 capsid in intact virus particles at 8.8 Å resolution
Florian K. M. Schur et al.
NATURE (2015)
PLUMED 2: New feathers for an old bird
Gareth A. Tribello et al.
COMPUTER PHYSICS COMMUNICATIONS (2014)
XSEDE: Accelerating Scientific Discovery
John Towns et al.
COMPUTING IN SCIENCE & ENGINEERING (2014)
Well-Tempered Metadynamics Converges Asymptotically
James F. Dama et al.
PHYSICAL REVIEW LETTERS (2014)
Cryo-electron microscopy of tubular arrays of HIV-1 Gag resolves structures essential for immature virus assembly
Tanmay A. M. Bharat et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Lipid domains in HIV-1 assembly
Naresh Yandrapalli et al.
FRONTIERS IN MICROBIOLOGY (2014)
Membrane interaction of retroviral Gag proteins
Robert A. Dick et al.
FRONTIERS IN MICROBIOLOGY (2014)
Moltemplate a Coarse-Grained Model Assembly Tool
Andrew I. Jewett et al.
BIOPHYSICAL JOURNAL (2013)
Parallel cascade selection molecular dynamics (PaCS-MD) to generate conformational transition pathway
Ryuhei Harada et al.
JOURNAL OF CHEMICAL PHYSICS (2013)
On the 'Dielectric Constant of Proteins: Smooth Dielectric Function for Macromolecular Modeling and Its Implementation in DelPhi
Lin Li et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
A Two-Pronged Structural Analysis of Retroviral Maturation Indicates that Core Formation Proceeds by a Disassembly-Reassembly Pathway Rather than a Displacive Transition
Paul W. Keller et al.
JOURNAL OF VIROLOGY (2013)
Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics
Gongpu Zhao et al.
NATURE (2013)
Distinct binding interactions of HIV-1 Gag to Psi and non-Psi RNAs: Implications for viral genomic RNA packaging
Joseph A. Webb et al.
RNA (2013)
A Trimer of Dimers Is the Basic Building Block for Human Immunodeficiency Virus-1 Capsid Assembly
Manuel Tsiang et al.
BIOCHEMISTRY (2012)
HIV-1 Assembly, Budding, and Maturation
Wesley I. Sundquist et al.
COLD SPRING HARBOR PERSPECTIVES IN MEDICINE (2012)
Structure of the HIV-1 Full-Length Capsid Protein in a Conformationally Trapped Unassembled State Induced by Small-Molecule Binding
Shoucheng Du et al.
JOURNAL OF MOLECULAR BIOLOGY (2011)
Small-Molecule Inhibition of Human Immunodeficiency Virus Type 1 Infection by Virus Capsid Destabilization
Jiong Shi et al.
JOURNAL OF VIROLOGY (2011)
On the Role of the SP1 Domain in HIV-1 Particle Assembly: a Molecular Switch?
Siddhartha A. K. Datta et al.
JOURNAL OF VIROLOGY (2011)
Human Immunodeficiency Virus Type 1 Nucleocapsid p1 Confers ESCRT Pathway Dependence
Elena Popova et al.
JOURNAL OF VIROLOGY (2010)
Properties and functions of the nucleocapsid protein in virus assembly
Delphine Muriaux et al.
RNA BIOLOGY (2010)
Cryo Electron Tomography of Native HIV-1 Budding Sites
Lars-Anders Carlson et al.
PLOS PATHOGENS (2010)
X-Ray Structures of the Hexameric Building Block of the HIV Capsid
Owen Pornillos et al.
CELL (2009)
Assembly of viruses and the pseudo-law of mass action
Alexander Yu. Morozov et al.
JOURNAL OF CHEMICAL PHYSICS (2009)
Isothermal-isobaric molecular dynamics using stochastic velocity rescaling
Giovanni Bussi et al.
JOURNAL OF CHEMICAL PHYSICS (2009)
PACKMOL: A Package for Building Initial Configurations for Molecular Dynamics Simulations
L. Martinez et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2009)
Enzyme-assisted self-assembly under thermodynamic control
Richard J. Williams et al.
NATURE NANOTECHNOLOGY (2009)
Structure and assembly of immature HIV
J. A. G. Briggs et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Do mammals make all their own inosital hexakisphasphate?
Andrew J. Letcher et al.
BIOCHEMICAL JOURNAL (2008)
Systematic Multiscale Parameterization of Heterogeneous Elastic Network Models of Proteins
Edward Lyman et al.
BIOPHYSICAL JOURNAL (2008)
A Systematic Methodology for Defining Coarse-Grained Sites in Large Biomolecules
Zhiyong Zhang et al.
BIOPHYSICAL JOURNAL (2008)
Three-Dimensional Analysis of Budding Sites and Released Virus Suggests a Revised Model for HIV-1 Morphogenesis
Lars-Anders Carlson et al.
CELL HOST & MICROBE (2008)
The relative entropy is fundamental to multiscale and inverse thermodynamic problems
M. Scott Shell
JOURNAL OF CHEMICAL PHYSICS (2008)
Well-tempered metadynamics: A smoothly converging and tunable free-energy method
Alessandro Barducci et al.
PHYSICAL REVIEW LETTERS (2008)
Electron cryotomography of immature HIV-1 virions reveals the structure of the CA and SP1 Gag shells
Elizabeth R. Wright et al.
EMBO JOURNAL (2007)
Distinguishing reversible from irreversible virus capsid assembly
Adam Zlotnick
JOURNAL OF MOLECULAR BIOLOGY (2007)
Second-order integrators for Langevin equations with holonomic constraints
Eric Vanden-Eijnden et al.
CHEMICAL PHYSICS LETTERS (2006)
Dynamic pathways for viral capsid assembly
Michael F. Hagan et al.
BIOPHYSICAL JOURNAL (2006)
Processing sites in the human immunodeficiency virus type 1 (HIV-1) Gag-Pro-Pol precursor are cleaved by the viral protease at different rates
SC Pettit et al.
RETROVIROLOGY (2005)
Mutation of the SP1 sequence impairs both multimerization and membrane-binding activities of human immunodeficiency virus type 1 Gag
XF Guo et al.
JOURNAL OF VIROLOGY (2005)
Complex changes in cellular inositol phosphate complement accompany transit through the cell cycle
CJ Barker et al.
BIOCHEMICAL JOURNAL (2004)
Phosphatidylinositol (4,5) bisphosphate regulates HIV-1 gag targeting to the plasma membrane
A Ono et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Role of RNA in facilitating Gag/Gag-Pol interaction
A Khorchid et al.
JOURNAL OF VIROLOGY (2002)
Modulation of HIV-like particle assembly in vitro by inositol phosphates
S Campbell et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
RNA is a structural element in retrovirus particles
D Muriaux et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Efficient particle production by minimal gag constructs which retain the carboxy-terminal domain of human immunodeficiency virus type 1 capsid-p2 and a late assembly domain
MA Accola et al.
JOURNAL OF VIROLOGY (2000)
A conformational switch controlling HIV-1 morphogenesis
I Gross et al.
EMBO JOURNAL (2000)