Journal
JOURNAL OF PROTEOMICS
Volume 263, Issue -, Pages -Publisher
ELSEVIER
DOI: 10.1016/j.jprot.2022.104615
Keywords
Chemical species; Proteins; Metabolites; Metalloproteins; DNA; Metals; Instrumentation
Categories
Funding
- FAPESP (Fundacao de Amparo a Pesquisa do Estado de Sao Paulo) [2014/50867-3, 2017/50085-3, 2018/25207-0, 2019/00018-3, 2019/24445-8, 2020/08543-7]
- CNPq (Conselho Nacional de Desenvolvimento Cientifico e Tecnologico, Brasilia, Brazil) [303231/2020-3]
- Biotechnology and Biological Sciences Research Council (BBSRC, United Kingdom) [BB/V014684/1]
- BBSRC [BB/V014684/1] Funding Source: UKRI
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This paper highlights the synergic effect between chemical speciation and omics, demonstrating an emerging area of research with a multitude of possibilities in terms of applications and further developments. This work not only defines and contextualizes speciomics and individual speciomes, but also demonstrates with some examples the great potential of this new interdisciplinary area of research.
The study of chemical speciation and the refinement and expansion of omics-based methods are both consolidated and highly active research fields. Although well established, such fields are extremely dynamic and are driven by the emergence of new strategies and improvements in instrumentation. In the case of omics-based studies, subareas including lipidomics, proteomics, metallomics, metabolomics and foodomics have emerged. Here, speciomics is being proposed as an umbrella term, that incorporates all of these subareas, to capture studies where the evaluation of chemical species is carried out using omics approaches. This paper contextualizes both speciomics and the speciome, and reviews omics applications used for species identification through examination of proteins, metalloproteins, metabolites, and nucleic acids. In addition, some implications from such studies and a perspective for future development of this area are provided.Significance: The synergic effect between chemical speciation and omics is highlighted in this work, demonstrating an emerging area of research with a multitude of possibilities in terms of applications and further developments. This work not only defines and contextualizes speciomics and individual speciomes, but also demonstrates with some examples the great potential of this new interdisciplinary area of research.
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