Related references
Note: Only part of the references are listed.Advances in the treatment of inflammatory bowel disease: Focus on polysaccharide nanoparticulate drug delivery systems
Hicheme Hadji et al.
ADVANCED DRUG DELIVERY REVIEWS (2022)
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
Derek M. Bickhart et al.
NATURE BIOTECHNOLOGY (2022)
Dysbiosis of gut microbiota in inflammatory bowel disease: Current therapies and potential for microbiota-modulating therapeutic approaches
Dikhnah Alshehri et al.
BOSNIAN JOURNAL OF BASIC MEDICAL SCIENCES (2021)
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals
Francesco Asnicar et al.
NATURE MEDICINE (2021)
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
Jonas Coelho Kasmanas et al.
NUCLEIC ACIDS RESEARCH (2021)
Clinical effects and gut microbiota changes of using probiotics, prebiotics or synbiotics in inflammatory bowel disease: a systematic review and meta-analysis
Xiao-Feng Zhang et al.
EUROPEAN JOURNAL OF NUTRITION (2021)
Vegetable waste and by-products to feed a healthy gut microbiota: Current evidence, machine learning and computational tools to design novel microbiome-targeted foods
Carlos Sabater et al.
TRENDS IN FOOD SCIENCE & TECHNOLOGY (2021)
Diet-Microbiota Interactions in Inflammatory Bowel Disease
Kohei Sugihara et al.
NUTRIENTS (2021)
A Machine Learning Approach to Study Glycosidase Activities from Bifidobacterium
Carlos Sabater et al.
MICROORGANISMS (2021)
HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data
Pranvera Hiseni et al.
MICROBIOME (2021)
gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models
Johannes Zimmermann et al.
GENOME BIOLOGY (2021)
Pfam: The protein families database in 2021
Jaina Mistry et al.
NUCLEIC ACIDS RESEARCH (2021)
Potential for enriching next-generation health-promoting gut bacteria through prebiotics and other dietary components
Cathy Lordan et al.
GUT MICROBES (2020)
Global burden of inflammatory bowel disease
Vipul Jairath et al.
LANCET GASTROENTEROLOGY & HEPATOLOGY (2020)
Utilization of xylan-type polysaccharides in co-culture fermentations of Bifidobacterium and Bacteroides species
Nuket Zeybek et al.
CARBOHYDRATE POLYMERS (2020)
The Controversial Role of Human Gut Lachnospiraceae
Mirco Vacca et al.
MICROORGANISMS (2020)
Highly Branched RG-I Domain Enrichment Is Indispensable for Pectin Mitigating against High-Fat Diet-Induced Obesity
Kai Zhu et al.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2020)
Deciphering diet-gut microbiota-host interplay: Investigations of pectin
Huizi Tan et al.
TRENDS IN FOOD SCIENCE & TECHNOLOGY (2020)
Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species
Arnaud Belcour et al.
ELIFE (2020)
Scaling read aligners to hundreds of threads on general-purpose processors
Ben Langmead et al.
BIOINFORMATICS (2019)
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
Jason Lloyd-Price et al.
NATURE (2019)
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
Andrew Maltez Thomas et al.
NATURE MEDICINE (2019)
Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease
Almut Heinken et al.
MICROBIOME (2019)
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang et al.
PEERJ (2019)
Defining the human gut host-phage network through single-cell viral tagging
Maria Dzunkova et al.
NATURE MICROBIOLOGY (2019)
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Edoardo Pasolli et al.
CELL (2019)
A next generation probiotic, Akkermansia muciniphila
Qixiao Zhai et al.
CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION (2019)
Intestinal anti-inflammatory effects of artichoke pectin and modified pectin fractions in the dextran sulfate sodium model of mice colitis. Artificial neural network modelling of inflammatory markers
Carlos Sabater et al.
FOOD & FUNCTION (2019)
Improved metagenomic analysis with Kraken 2
Derrick E. Wood et al.
GENOME BIOLOGY (2019)
Xylo- and arabinoxylooligosaccharides from wheat bran by endoxylanases, utilisation by probiotic bacteria, and structural studies of the enzymes
Sindhu Mathew et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)
Effects of dietary fiber levels on cecal microbiota composition in geese
Yanpin Li et al.
ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES (2018)
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
Han Zhang et al.
NUCLEIC ACIDS RESEARCH (2018)
Gut microbiota in the pathogenesis of inflammatory bowel disease
Atsushi Nishida et al.
CLINICAL JOURNAL OF GASTROENTEROLOGY (2018)
Prebiotic inulin-type fructans and galacto-oligosaccharides: definition, specificity, function, and application in gastrointestinal disorders
Bridgette Wilson et al.
JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY (2017)
Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naive Parkinson's disease patients
J. R. Bedarf et al.
GENOME MEDICINE (2017)
Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment
Julia Fukuyama et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Microbial Anti-Inflammatory Molecule (MAM) from Faecalibacterium prausnitzii Shows a Protective Effect on DNBS and DSS-Induced Colitis Model in Mice through Inhibition of NF-κB Pathway
Natalia M. Breyner et al.
FRONTIERS IN MICROBIOLOGY (2017)
The impact of western Diet and Nutrients on the Microbiota and immune Response at Mucosal interfaces
Donjete Statovci et al.
FRONTIERS IN IMMUNOLOGY (2017)
Community characteristics of the gut microbiomes of competitive cyclists
Lauren M. Petersen et al.
MICROBIOME (2017)
A Gut Microbial Mimic that Hijacks Diabetogenic Autoreactivity to Suppress Colitis
Roopa Hebbandi Nanjundappa et al.
CELL (2017)
Bracken: estimating species abundance in metagenomics data
Jennifer Lu et al.
PEERJ COMPUTER SCIENCE (2017)
Reduced Abundance of Butyrate-Producing Bacteria Species in the Fecal Microbial Community in Crohn's Disease
Kenichiro Takahashi et al.
DIGESTION (2016)
Wheat bran promotes enrichment within the human colonic microbiota of butyrate-producing bacteria that release ferulic acid
Sylvia H. Duncan et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Increased Intestinal Microbial Diversity Following Fecal Microbiota Transplant for Active Crohn's Disease
Byron P. Vaughn et al.
INFLAMMATORY BOWEL DISEASES (2016)
MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices
Dinghua Li et al.
METHODS (2016)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Potential of fecal microbiota for early-stage detection of colorectal cancer
Georg Zeller et al.
MOLECULAR SYSTEMS BIOLOGY (2014)
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
Jaina Mistry et al.
NUCLEIC ACIDS RESEARCH (2013)
Hypervariable loci in the human gut virome
Samuel Minot et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
Daniel N. Frank et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Clinical, microbiological, and immunological effects of fructo-oligosaccharide in patients with Crohn's disease
JO Lindsay et al.
GUT (2006)
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
C Manichanh et al.
GUT (2006)
Share Paper
