4.7 Article

Long non-coding RNAs are involved in immune resistance to Aeromonas hydrophila in black carp (Mylopharyngodon piceus)

Related references

Note: Only part of the references are listed.
Article Fisheries

Genome-wide analysis of Toll-like receptors in zebrafish and the effect of rearing temperature on the receptors in response to stimulated pathogen infection

Hong Chen et al.

Summary: The study investigated the effect of water temperature on Toll-like receptors (TLRs) in zebrafish, revealing that TLR3, TLR5, and TLR21 are more sensitive to temperature variation and pathogen stimulation. The results provide new insights into the roles of temperature in the host innate immune response in fishes and its implications for disease prevention in aquaculture.

JOURNAL OF FISH DISEASES (2021)

Review Pharmacology & Pharmacy

The role of the brain renin-angiotensin system (RAS) in mild traumatic brain injury (TBI)

Jason D. Vadhan et al.

Summary: This review discusses how activation of the brain RAS following TBI contributes to permanent brain damage, and how drugs that counteract activation of the AT(1)R can potentially ameliorate TBI-induced brain damage.

PHARMACOLOGY & THERAPEUTICS (2021)

Article Biochemistry & Molecular Biology

The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets

Damian Szklarczyk et al.

Summary: The STRING database integrates various associations between proteins, including physical interactions and functional associations, by collecting evidence from sources such as literature, databases, computational predictions, and systematic transfers. STRING aims for wide coverage and provides extensive user interface features and querying methods for experimental data.

NUCLEIC ACIDS RESEARCH (2021)

Article Engineering, Biomedical

Cowpea mosaic virus stimulates antitumor immunity through recognition by multiple MYD88-dependent toll-like receptors

Chenkai Mao et al.

Summary: Research found that CPMV elicited stronger cytokine and chemokine induction in mouse splenocytes and exhibited more potent anti-tumor efficacy compared to eCPMV. Both CPMV and eCPMV required MyD88 for immune responses, and their capsids were recognized by MyD88-dependent TLR2 and TLR4. In addition, CPMV was also recognized by TLR7, which was critical for its better efficacy through the secretion of type I interferons.

BIOMATERIALS (2021)

Review Cell Biology

Src family kinases, adaptor proteins and the actin cytoskeleton in epithelial-to-mesenchymal transition

Maria A. Ortiz et al.

Summary: Despite over a century of scientific inquiry since the discovery of v-SRC, there is still no final judgement on SRC function. However, Src family kinases have been defined as key players in tumor progression, invasion and metastasis. Understanding the role of SFKs in mediating invasion and metastasis processes has grown along with the evidence supporting epithelial-mesenchymal transition (EMT) in these processes. This article describes key mechanisms through which SFKs play critical roles in epithelial homeostasis and propagate invasive signals.

CELL COMMUNICATION AND SIGNALING (2021)

Review Biochemistry & Molecular Biology

Toll-like Receptors and the Control of Immunity

Katherine A. Fitzgerald et al.

Article Fisheries

Black carp RIPK1 negatively regulates MAVS-mediated antiviral signaling during the innate immune activation

Xinchi Xie et al.

DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2020)

Review Medicine, Research & Experimental

Src family kinases and pulmonary fibrosis: A review

Hang Li et al.

BIOMEDICINE & PHARMACOTHERAPY (2020)

Article Biochemistry & Molecular Biology

GENCODE reference annotation for the human and mouse genomes

Adam Frankish et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

NONCODEV5: a comprehensive annotation database for long non-coding RNAs

ShuangSang Fang et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemical Research Methods

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen et al.

BIOINFORMATICS (2018)

Review Physiology

Long Non-coding RNA Structure and Function: Is There a Link?

Anna Zampetaki et al.

FRONTIERS IN PHYSIOLOGY (2018)

Article Biotechnology & Applied Microbiology

Genome-wide identification and differentially expression analysis of lncRNAs in tilapia

Bi Jun Li et al.

BMC GENOMICS (2018)

Review Biotechnology & Applied Microbiology

LncRNA as a diagnostic and prognostic biomarker in bladder cancer: a systematic review and meta-analysis

Jing Quan et al.

ONCOTARGETS AND THERAPY (2018)

Review Immunology

Non-coding RNAs Function as Immune Regulators in Teleost Fish

Man Wang et al.

FRONTIERS IN IMMUNOLOGY (2018)

Review Biochemistry & Molecular Biology

Role of G-protein-coupled estrogen receptor (GPER/GPR30) in maintenance of meiotic arrest in fish oocytes

Peter Thomas

JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY (2017)

Article Biochemistry & Molecular Biology

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

Yu-Jian Kang et al.

NUCLEIC ACIDS RESEARCH (2017)

Review Genetics & Heredity

Unique features of long non-coding RNA biogenesis and function

Jeffrey J. Quinn et al.

NATURE REVIEWS GENETICS (2016)

Article Multidisciplinary Sciences

Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout

Rafet Al-Tobasei et al.

PLOS ONE (2016)

Article Biochemical Research Methods

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

Felipe A. Simao et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

InterProScan 5: genome-scale protein function classification

Philip Jones et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Multicore and GPU algorithms for Nussinov RNA folding

Junjie Li et al.

BMC BIOINFORMATICS (2014)

Article Fisheries

Effects of TLR agonists and viral infection on cytokine and TLR expression in Atlantic salmon (Salmo salar)

Marianne Arnemo et al.

DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2014)

Article Multidisciplinary Sciences

De Novo Assembly and Transcriptome Analysis of Contrasting Sugarcane Varieties

Claudio Benicio Cardoso-Silva et al.

PLOS ONE (2014)

Article Biochemistry & Molecular Biology

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

Liang Sun et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

A Long Noncoding RNA Mediates Both Activation and Repression of Immune Response Genes

Susan Carpenter et al.

SCIENCE (2013)

Review Neurosciences

Identification and function of long non-coding RNA

Carl Emst et al.

FRONTIERS IN CELLULAR NEUROSCIENCE (2013)

Article Physiology

Estrogen effects on human airway smooth muscle involve cAMP and protein kinase A

Elizabeth A. Townsend et al.

AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY (2012)

Article Biochemical Research Methods

CD-HIT: accelerated for clustering the next-generation sequencing data

Limin Fu et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li et al.

BMC BIOINFORMATICS (2011)

Review Biochemistry & Molecular Biology

The functional role of long non-coding RNA in human carcinomas

Ewan A. Gibb et al.

MOLECULAR CANCER (2011)

Review Biochemistry & Molecular Biology

The Structural Biology of Toll-like Receptors

Istvan Botos et al.

STRUCTURE (2011)

Review Biochemistry & Molecular Biology

The cell-cell adhesion molecule E-cadherin

F. van Roy et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2008)

Review Medicine, General & Internal

Renin-angiotensin system revisited

F. Fyhrquist et al.

JOURNAL OF INTERNAL MEDICINE (2008)

Article Cell Biology

Ripples from neighbouring transcription

Miki Ebisuya et al.

NATURE CELL BIOLOGY (2008)

Review Biochemistry & Molecular Biology

Src-family kinases: rheostats of immune cell signaling

CA Lowell

MOLECULAR IMMUNOLOGY (2004)

Review Biochemistry & Molecular Biology

Structure and regulation of Src family kinases

TJ Boggon et al.

ONCOGENE (2004)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)

Article Medicine, General & Internal

An overview of the immune system

J Parkin et al.

LANCET (2001)

Article Biochemistry & Molecular Biology

The role of Toll-like receptors and MyD88 in innate immune responses

S Akira et al.

JOURNAL OF ENDOTOXIN RESEARCH (2000)