Journal
CHEMICAL RESEARCH IN TOXICOLOGY
Volume 35, Issue 8, Pages 1370-1382Publisher
AMER CHEMICAL SOC
DOI: 10.1021/acs.chemrestox.2c00074
Keywords
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Funding
- National Institutes of Health [K99-LM013646, T32-ES019851, P30-ES013508, R01-AG066833]
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ComptoxAI is a new data infrastructure that utilizes computational and artificial intelligence research to predict toxicology. It features a graph structured knowledge base that can quickly answer complex questions and includes various real-world use cases.
ComptoxAI is a new data infrastructure for computational and artificial intelligence research in predictive toxicology. Here, we describe and showcase ComptoxAI's graph structured knowledge base in the context of three real-world use cases, demonstrating that it can rapidly answer complex questions about toxicology that are infeasible using previous technologies and data resources. These use-cases each demonstrate a tool for information retrieval from the knowledge base being used to solve a specific task: The shortest path module is used to identify mechanistic links between perfluorooctanoic acid (PFOA) exposure and nonalcoholic fatty liver disease; the expand network module identifies communities that are linked to dioxin toxicity; and the quantitative structure-activity relationship (QSAR) dataset generator predicts pregnane X receptor agonism in a set of 4,021 pesticide ingredients. The contents of ComptoxAI's source data are rigorously aggregated from a diverse array of public third-party databases, and ComptoxAI is designed as a free, public, and open-source toolkit to enable diverse classes of users including biomedical researchers, public health and regulatory officials, and the general public to predict toxicology of unknowns and modes of action.
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