Related references
Note: Only part of the references are listed.Unipept CLI 2.0: adding support for visualizations and functional annotations
Pieter Verschaffelt et al.
BIOINFORMATICS (2020)
Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome
C. De Tender et al.
SCIENTIFIC REPORTS (2019)
Unipept 4.0: Functional Analysis of Metaproteome Data
Robbert Gurdeep Singh et al.
JOURNAL OF PROTEOME RESEARCH (2019)
Improved metagenomic analysis with Kraken 2
Derrick E. Wood et al.
GENOME BIOLOGY (2019)
Shotgun metagenomics, from sampling to analysis
Christopher Quince et al.
NATURE BIOTECHNOLOGY (2017)
Fast and sensitive taxonomic classification for metagenomics with Kaiju
Peter Menzel et al.
NATURE COMMUNICATIONS (2016)
An evaluation of the accuracy and speed of metagenome analysis tools
Stinus Lindgreen et al.
SCIENTIFIC REPORTS (2016)
CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
Rachid Ounit et al.
BMC GENOMICS (2015)
The Unipept metaproteomics analysis pipeline
Bart Mesuere et al.
PROTEOMICS (2015)
Functional Genomic Characterization of Virulence Factors from Necrotizing Fasciitis-Causing Strains of Aeromonas hydrophila
Christopher J. Grim et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
GETTING INTIMATE WITH TRYPSIN, THE LEADING PROTEASE IN PROTEOMICS
Elien Vandermarliere et al.
MASS SPECTROMETRY REVIEWS (2013)
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
Yu Peng et al.
BIOINFORMATICS (2012)
Unipept: Tryptic Peptide-Based Biodiversity Analysis of Metaproteome Samples
Bart Mesuere et al.
JOURNAL OF PROTEOME RESEARCH (2012)
The NCBI Taxonomy database
Scott Federhen
NUCLEIC ACIDS RESEARCH (2012)
MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
Toshiaki Namiki et al.
NUCLEIC ACIDS RESEARCH (2012)
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
Jason Pell et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Ray Meta: scalable de novo metagenome assembly and profiling
Sebastien Boisvert et al.
GENOME BIOLOGY (2012)
Meta-IDBA: a de Novo assembler for metagenomic data
Yu Peng et al.
BIOINFORMATICS (2011)
Integrative analysis of environmental sequences using MEGAN4
Daniel H. Huson et al.
GENOME RESEARCH (2011)
Complete Genome Sequence of the Bacterium Methylovorus sp. Strain MP688, a High-Level Producer of Pyrroloquinolone Quinone (vol 193, pg 1012, 2011)
Xiang-hua Xiong et al.
JOURNAL OF BACTERIOLOGY (2011)
Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae
Alla Lapidus et al.
JOURNAL OF BACTERIOLOGY (2011)
SPACE-EFFICIENT PREPROCESSING SCHEMES FOR RANGE MINIMUM QUERIES ON STATIC ARRAYS
Johannes Fischer et al.
SIAM JOURNAL ON COMPUTING (2011)
UniProt Knowledgebase: a hub of integrated protein data
Michele Magrane
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Ab initio gene identification in metagenomic sequences
Wenhan Zhu et al.
NUCLEIC ACIDS RESEARCH (2010)
FragGeneScan: predicting genes in short and error-prone reads
Mina Rho et al.
NUCLEIC ACIDS RESEARCH (2010)
ABySS: A parallel assembler for short read sequence data
Jared T. Simpson et al.
GENOME RESEARCH (2009)
Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models
Arthur Brady et al.
NATURE METHODS (2009)
MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes
Hideki Noguchi et al.
DNA RESEARCH (2008)
Microbiology - Metagenomics
Philip Hugenholtz et al.
NATURE (2008)
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
B Boeckmann et al.
NUCLEIC ACIDS RESEARCH (2003)
Share Paper
