Related references
Note: Only part of the references are listed.GCEN: An Easy-to-Use Toolkit for Gene Co-Expression Network Analysis and lncRNAs Annotation
Wen Chen et al.
CURRENT ISSUES IN MOLECULAR BIOLOGY (2022)
A cycloartenol synthase from the steroidal saponin biosynthesis pathway of Paris polyphylla
Si-Yuan Guo et al.
JOURNAL OF ASIAN NATURAL PRODUCTS RESEARCH (2021)
Elevated CO2 enhances growth and differentially affects saponin content in Paris polyphylla var. yunnanensis
Qi Qiang et al.
INDUSTRIAL CROPS AND PRODUCTS (2020)
Transcriptome analysis of Paris polyphylla var. yunnanensis illuminates the biosynthesis and accumulation of steroidal saponins in rhizomes and leaves
Xiaoyang Gao et al.
PHYTOCHEMISTRY (2020)
Organ-specific transcriptome sequencing and mining of genes involved in polyphyllin biosynthesis in Paris polyphylla
Bo Li et al.
INDUSTRIAL CROPS AND PRODUCTS (2020)
The AP2/ERF transcription factor SmERF128 positively regulates diterpenoid biosynthesis in Salvia miltiorrhiza
Yu Zhang et al.
PLANT MOLECULAR BIOLOGY (2019)
Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginseng
Le Xue et al.
BMC GENOMICS (2019)
Metabolic and transcriptional analyses in response to potent inhibitors establish MEP pathway as major route for camptothecin biosynthesis in Nothapodytes nimmoniana (Graham) Mabb
Gulzar A. Rather et al.
BMC PLANT BIOLOGY (2019)
Transcriptome analyses of Paris polyphylla var. chinensis, Ypsilandra thibetica, and Polygonatum kingianum characterize their steroidal saponin biosynthesis pathway
Zhenyan Yang et al.
FITOTERAPIA (2019)
Repeated evolution of cytochrome P450-mediated spiroketal steroid biosynthesis in plants
Bastien Christ et al.
NATURE COMMUNICATIONS (2019)
Effect of cultivation years on saponins in Paris Polyphylla var. yunnanensis using ultra-high liquid chromatography-tandem mass spectrometry and Fourier transform infrared spectroscopy
Yuan-Zhong Wang et al.
PLANT GROWTH REGULATION (2018)
Paris in the spring: A review of the trade, conservation and opportunities in the shift from wild harvest to cultivation of Paris polyphylla (Trilliaceae)
A. B. Cunningham et al.
JOURNAL OF ETHNOPHARMACOLOGY (2018)
The Genome of Artemisia annua Provides Insight into the Evolution of Asteraceae Family and Artemisinin Biosynthesis
Qian Shen et al.
MOLECULAR PLANT (2018)
Combinatorial Transcriptional Control of Plant Specialized Metabolism
Maite Colinas et al.
TRENDS IN PLANT SCIENCE (2018)
A cytochrome P450 monooxygenase responsible for the C-22 hydroxylation step in the Paris polyphylla steroidal saponin biosynthesis pathway
Yan Yin et al.
PHYTOCHEMISTRY (2018)
Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications
Xiaoyang Gao et al.
BMC GENOMICS (2018)
Rapid and simple determination of polyphyllin I, II, VI, and VII in different harvest times of cultivated Paris polyphylla Smith var. yunnanensis (Franch.) Hand.-Mazz by UPLC-MS/MS and FT-IR
Zhe Wu et al.
JOURNAL OF NATURAL MEDICINES (2017)
CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features
Yu-Jian Kang et al.
NUCLEIC ACIDS RESEARCH (2017)
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
James W. Byng et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2016)
Plant ABC Transporters Enable Many Unique Aspects of a Terrestrial Plant's Lifestyle
Jae-Ung Hwang et al.
MOLECULAR PLANT (2016)
Steroidal saponins from stems and leaves of Paris polyphylla var. yunnanensis
Xu-Jie Qin et al.
PHYTOCHEMISTRY (2016)
The basic helix-loop-helix transcription factor BIS2 is essential for monoterpenoid indole alkaloid production in the medicinal plant Catharanthus roseus
Alex Van Moerkercke et al.
PLANT JOURNAL (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Natural Variation in Monoterpene Synthesis in Kiwifruit: Transcriptional Regulation of Terpene Synthases by NAC and ETHYLENE-INSENSITIVE3-Like Transcription Factors
Niels J. Nieuwenhuizen et al.
PLANT PHYSIOLOGY (2015)
The bHLH transcription factor BIS1 controls the iridoid branch of the monoterpenoid indole alkaloid pathway in Catharanthus roseus
Alex Van Moerkercke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Triterpene Biosynthesis in Plants
Ramesha Thimmappa et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 65 (2014)
Paris polyphylla: Chemical and Biological Prospectives
Jagmohan S. Negi et al.
ANTI-CANCER AGENTS IN MEDICINAL CHEMISTRY (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Chemical Constituents of Plants from the Genus Paris
Jin-Chao Wei et al.
CHEMISTRY & BIODIVERSITY (2014)
Investigation of the distribution and season regularity of resveratrol in Vitis amurensis via HPLC-DAD-MS/MS
Mei Ji et al.
FOOD CHEMISTRY (2014)
A universe of dwarfs and giants: genome size and chromosome evolution in the monocot family Melanthiaceae
Jaume Pellicer et al.
NEW PHYTOLOGIST (2014)
Plant regeneration through direct somatic embryogenesis from immature zygotic embryos of the medicinal plant, Paris polyphylla Sm.
Shiveirou Raomai et al.
PLANT CELL TISSUE AND ORGAN CULTURE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Transcriptional regulation of secondary metabolite biosynthesis in plants
Barunava Patra et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2013)
Triterpenoid saponins from rhizomes of Paris polyphylla var. yunnanensis
Xia Wu et al.
CARBOHYDRATE RESEARCH (2013)
C22-steroidal lactone glycosides from stems and leaves of Paris polyphylla var. yunnanensis
Xu-Jie Qin et al.
FITOTERAPIA (2013)
Transcriptome analysis based on next-generation sequencing of non-model plants producing specialized metabolites of biotechnological interest
Mei Xiao et al.
JOURNAL OF BIOTECHNOLOGY (2013)
Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts
Liang Sun et al.
NUCLEIC ACIDS RESEARCH (2013)
Seasonal accumulation of major alkaloids in organs of pharmaceutical crop Narcissus Carlton
Andrea Lubbe et al.
PHYTOCHEMISTRY (2013)
Network analysis for gene discovery in plant-specialized metabolism
Yasuhiro Higashi et al.
PLANT CELL AND ENVIRONMENT (2013)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
Comparative study on hemostatic, cytotoxic and hemolytic activities of different species of Paris L.
Zhen Liu et al.
JOURNAL OF ETHNOPHARMACOLOGY (2012)
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
The Transcription Factor CrWRKY1 Positively Regulates the Terpenoid Indole Alkaloid Biosynthesis in Catharanthus roseus
Nitima Suttipanta et al.
PLANT PHYSIOLOGY (2011)
Qualitative and quantitative determination of major saponins in Paris and Trillium by HPLC-ELSD and HPLC-MS/MS
Shuli Man et al.
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2010)
Qualitative and quantitative analysis of steroidal saponins in crude extracts from Paris polyphylla var. yunnanensis and P. polyphylla var. chinensis by high performance liquid chromatography coupled with mass spectrometry
Ting Zhang et al.
JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS (2010)
Gene ontology analysis for RNA-seq: accounting for selection bias
Matthew D. Young et al.
GENOME BIOLOGY (2010)
Regulation and function of root exudates
Dayakar V. Badri et al.
PLANT CELL AND ENVIRONMENT (2009)
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
Birgitta Bremer et al.
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2009)
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder et al.
BMC BIOINFORMATICS (2008)
Analyzing real-time PCR data by the comparative C-T method
Thomas D. Schmittgen et al.
NATURE PROTOCOLS (2008)
KAAS: an automatic genome annotation and pathway reconstruction server
Yuki Moriya et al.
NUCLEIC ACIDS RESEARCH (2007)
Mfuzz: A software package for soft clustering of microarray data
Lokesh Kumar et al.
BIOINFORMATION (2007)
ABC transporters involved in the transport of plant secondary metabolites
K Yazaki
FEBS LETTERS (2006)
Chemical characterization of Allium ursinum L. depending on harvesting time
B Schmitt et al.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2005)
Phenolic diterpenes, flavones, and rosmarinic acid distribution during the development of leaves, flowers, stems, and roots of Rosmarinus officinalis.: Antioxidant activity
MJ del Baño et al.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2003)
Involvement of CjMDR1, a plant multidrug-resistance-type ATP-binding cassette protein, in alkaloid transport in Coptis japonica
N Shitan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
The ABC transporter SpTUR2 confers resistance to the antifungal diterpene sclareol
S van den Brûle et al.
PLANT JOURNAL (2002)
The Arabidopsis thaliana ABC protein superfamily, a complete inventory
R Sánchez-Fernández et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Plant part substitution -: a way to conserve endangered medicinal plants?
S Zschocke et al.
JOURNAL OF ETHNOPHARMACOLOGY (2000)